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Calcium in PDB 5e7t: Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009

Protein crystallography data

The structure of Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009, PDB code: 5e7t was solved by P.Legrand, B.Collins, S.Blangy, J.Murphy, S.Spinelli, C.Gutierrez, N.Richet, C.Kellenberger, A.Desmyter, J.Mahony, D.Van Sinderen, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.85 / 2.90
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 211.960, 211.960, 211.960, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 23.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009 (pdb code 5e7t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009, PDB code: 5e7t:

Calcium binding site 1 out of 1 in 5e7t

Go back to Calcium Binding Sites List in 5e7t
Calcium binding site 1 out of 1 in the Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Tripod (Bppuct-A-L) From the Baseplate of Bacteriophage TUC2009 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca201

b:75.6
occ:1.00
OE1 L:GLN114 3.5 53.0 1.0
NE2 L:GLN114 4.1 60.4 1.0
CD2 L:LEU141 4.2 54.4 1.0
CD L:GLN114 4.2 60.0 1.0
O L:GLY140 4.5 58.9 1.0
C L:GLY140 4.6 59.0 1.0
OH L:TYR116 4.7 62.1 1.0
N L:GLY140 4.8 56.4 1.0
CE1 L:TYR147 4.8 58.8 1.0
CA L:GLY140 4.9 56.3 1.0

Reference:

P.Legrand, B.Collins, S.Blangy, J.Murphy, S.Spinelli, C.Gutierrez, N.Richet, C.Kellenberger, A.Desmyter, J.Mahony, D.Van Sinderen, C.Cambillau. The Atomic Structure of the Phage TUC2009 Baseplate Tripod Suggests That Host Recognition Involves Two Different Carbohydrate Binding Modules. Mbio V. 7 01781 2016.
ISSN: ESSN 2150-7511
PubMed: 26814179
DOI: 10.1128/MBIO.01781-15
Page generated: Sat Dec 12 05:23:07 2020

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