Atomistry » Calcium » PDB 5e7t-5erv » 5e8i
Atomistry »
  Calcium »
    PDB 5e7t-5erv »
      5e8i »

Calcium in PDB 5e8i: Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg

Protein crystallography data

The structure of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg, PDB code: 5e8i was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 3.45
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.647, 86.647, 230.282, 90.00, 90.00, 120.00
R / Rfree (%) 22.2 / 27.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg (pdb code 5e8i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg, PDB code: 5e8i:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 1 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca101

b:0.7
occ:1.00
O6 B:DG9 3.0 0.3 1.0
N7 B:DA8 3.9 0.6 1.0
N7 B:DG9 3.9 0.9 1.0
C6 B:DG9 4.0 0.0 1.0
C5 B:DG9 4.3 0.7 1.0
C8 B:DA8 4.5 0.4 1.0
OE2 D:GLU303 4.6 0.7 1.0
C5 B:DA8 4.6 0.8 1.0
N6 B:DA8 4.7 0.3 1.0

Calcium binding site 2 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 2 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca101

b:0.1
occ:1.00
N7 C:DG21 3.0 0.3 1.0
O6 C:DG21 3.9 0.0 1.0
C8 C:DG21 3.9 0.2 1.0
C5 C:DG21 4.0 0.7 1.0
O6 C:DG22 4.1 0.5 1.0
C6 C:DG21 4.3 0.0 1.0
C2' C:DC20 4.9 0.9 1.0
C6 C:DC20 4.9 0.2 1.0
C6 C:DG22 5.0 0.4 1.0
N7 C:DG22 5.0 0.2 1.0

Calcium binding site 3 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 3 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca102

b:0.1
occ:1.00
N2 C:DG21 4.0 0.7 1.0
N3 C:DG21 4.5 0.8 1.0
C1' C:DG22 4.5 0.5 1.0
O4' C:DG22 4.5 0.8 1.0
C2 C:DG21 4.8 0.5 1.0

Calcium binding site 4 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 4 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca101

b:0.3
occ:1.00
N7 F:DG21 3.1 0.7 1.0
C8 F:DG21 3.8 0.6 1.0
C5 F:DG21 4.1 0.6 1.0
O6 F:DG22 4.3 0.8 1.0
O6 F:DG21 4.4 0.5 1.0
C2' F:DC20 4.6 0.3 1.0
OP2 F:DG21 4.6 0.5 1.0
C6 F:DG21 4.7 0.0 1.0
C6 F:DC20 4.9 0.6 1.0
N7 F:DG22 4.9 0.3 1.0

Calcium binding site 5 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 5 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca102

b:0.7
occ:1.00
N2 F:DG21 4.0 0.6 1.0
N3 F:DG21 4.4 0.2 1.0
O4' E:DG6 4.5 0.5 1.0
N2 E:DG5 4.6 0.4 1.0
C2 F:DG21 4.7 0.6 1.0
O4' F:DG22 4.7 0.6 1.0
C4' F:DG22 5.0 0.4 1.0
C5' F:DG22 5.0 0.5 1.0

Calcium binding site 6 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 6 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca101

b:0.6
occ:1.00
N2 I:DG21 4.0 0.8 1.0
O4' H:DG6 4.2 1.0 1.0
N2 H:DG5 4.5 0.0 1.0
C4' H:DG6 4.8 0.9 1.0
N3 I:DG21 4.8 0.6 1.0
C2 I:DG21 4.9 0.2 1.0
N3 H:DG5 5.0 0.2 1.0

Calcium binding site 7 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 7 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ca101

b:0.3
occ:1.00
N7 I:DG21 3.8 0.3 1.0
O6 I:DG22 3.8 0.5 1.0
O6 I:DG21 4.5 0.2 1.0
C8 I:DG21 4.6 0.1 1.0
C5 I:DG21 4.7 0.2 1.0
C6 I:DG22 4.8 0.1 1.0
C6 I:DG21 5.0 0.4 1.0
N7 I:DG22 5.0 0.6 1.0

Calcium binding site 8 out of 8 in 5e8i

Go back to Calcium Binding Sites List in 5e8i
Calcium binding site 8 out of 8 in the Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of the Dna Binding Domain of Human Transcription Factor FLI1 in Complex with A 10-Mer Dna Accggaagtg within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca101

b:0.4
occ:1.00
N2 L:DG21 3.8 0.5 1.0
N3 L:DG21 4.3 0.1 1.0
C2 L:DG21 4.5 0.3 1.0
O4' L:DG22 4.7 0.7 1.0
C1' L:DG22 4.7 0.6 1.0
N2 K:DG5 4.8 0.8 1.0
O4' K:DG6 4.9 0.8 1.0

Reference:

C.Hou, O.V.Tsodikov. Structural Basis For Dimerization and Dna Binding of Transcription Factor FLI1. Biochemistry V. 54 7365 2015.
ISSN: ISSN 0006-2960
PubMed: 26618620
DOI: 10.1021/ACS.BIOCHEM.5B01121
Page generated: Sat Dec 12 05:23:10 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy