Calcium in PDB 5erv: Ternary Complex of Gephe - Adp - Tungsten Cluster

Enzymatic activity of Ternary Complex of Gephe - Adp - Tungsten Cluster

All present enzymatic activity of Ternary Complex of Gephe - Adp - Tungsten Cluster:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of Ternary Complex of Gephe - Adp - Tungsten Cluster, PDB code: 5erv was solved by V.B.Kasaragod, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.83 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.661, 99.675, 113.237, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 20.3

Other elements in 5erv:

The structure of Ternary Complex of Gephe - Adp - Tungsten Cluster also contains other interesting chemical elements:

Tungsten (W) 10 atoms
Magnesium (Mg) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Ternary Complex of Gephe - Adp - Tungsten Cluster (pdb code 5erv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Ternary Complex of Gephe - Adp - Tungsten Cluster, PDB code: 5erv:

Calcium binding site 1 out of 1 in 5erv

Go back to Calcium Binding Sites List in 5erv
Calcium binding site 1 out of 1 in the Ternary Complex of Gephe - Adp - Tungsten Cluster


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ternary Complex of Gephe - Adp - Tungsten Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca814

b:21.4
occ:1.00
O1A A:ADP801 2.3 19.0 1.0
O A:HOH992 2.3 23.5 1.0
O A:HOH1035 2.4 17.4 1.0
O A:HOH1076 2.4 21.8 1.0
O A:HOH1004 2.4 24.4 1.0
O A:HOH1027 2.5 37.5 1.0
O A:HOH1083 2.5 19.7 1.0
PA A:ADP801 3.4 18.8 1.0
H A:GLY573 3.5 23.0 1.0
O2A A:ADP801 3.9 24.5 1.0
H2' A:ADP801 4.0 25.0 1.0
O5' A:ADP801 4.1 14.8 1.0
HA2 A:GLY507 4.1 17.9 1.0
HA3 A:GLY507 4.1 17.9 1.0
OE2 A:GLU509 4.1 22.9 1.0
N A:GLY573 4.1 19.1 1.0
H8 A:ADP801 4.1 16.5 1.0
HA2 A:GLY573 4.1 23.3 1.0
OD1 A:ASP549 4.2 28.6 1.0
OD1 A:ASP580 4.3 38.4 1.0
OE1 A:GLU509 4.3 19.9 1.0
O A:THR506 4.5 18.5 1.0
MG A:MG802 4.5 28.0 1.0
HA3 A:GLY572 4.5 18.0 1.0
CA A:GLY507 4.6 14.9 1.0
CA A:GLY573 4.6 19.4 1.0
OD2 A:ASP549 4.6 21.9 1.0
CD A:GLU509 4.6 19.6 1.0
HA2 A:GLY572 4.7 18.0 1.0
CG A:ASP549 4.8 49.4 1.0
O3A A:ADP801 4.8 24.4 1.0
HA3 A:GLY573 4.8 23.3 1.0
C A:GLY572 5.0 17.8 1.0
CA A:GLY572 5.0 15.0 1.0

Reference:

V.B.Kasaragod, H.Schindelin. Structural Framework For Metal Incorporation During Molybdenum Cofactor Biosynthesis. Structure V. 24 782 2016.
ISSN: ISSN 0969-2126
PubMed: 27112598
DOI: 10.1016/J.STR.2016.02.023
Page generated: Sat Dec 12 05:23:54 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy