Calcium in PDB 5eyy: Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome.

The structure of Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome., PDB code: 5eyy was solved by V.R.Pinto-Junior, V.J.S.Osterne, M.Q.Santiago, A.C.Almeida, C.F.Lossio, J.C.Silva-Filho, R.P.H.Almeida, C.S.Teixeira, P.Delatorre, B.A.M.Rocha, K.S.Nascimento, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.46 / 1.90
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	72.580, 72.580, 128.450, 90.00, 90.00, 90.00
R / Rfree (%)	15.6 / 17.7

The structure of Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome. also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Calcium atom in the Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome. (pdb code 5eyy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome., PDB code: 5eyy:

Calcium binding site 1 out of 1 in the Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Tetragonal Form of Centrolobium Tomentosum Seed Lectin (Ctl) Complexed with MAN1-3MAN-Ome. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:11.3 occ:1.00 OD2 A:ASP142 2.3 13.3 1.0 O A:PHE133 2.3 13.2 1.0 ND2 A:ASN139 2.3 9.1 1.0 O A:HOH525 2.4 11.1 1.0 O A:HOH426 2.4 11.6 1.0 OD1 A:ASP131 2.4 11.1 1.0 OD2 A:ASP131 2.5 11.9 1.0 CG A:ASP131 2.8 12.1 1.0 CG A:ASP142 3.4 12.1 1.0 C A:PHE133 3.5 12.0 1.0 CG A:ASN139 3.5 14.6 1.0 OD1 A:ASP142 3.8 11.2 1.0 CB A:ASN139 4.1 11.0 1.0 MN A:MN303 4.2 15.1 1.0 CB A:ASP131 4.3 10.9 1.0 NE1 A:TRP141 4.3 11.8 1.0 CA A:PHE133 4.4 12.0 1.0 N A:PHE133 4.4 13.2 1.0 N A:TYR134 4.4 11.1 1.0 O A:GLY107 4.4 11.0 1.0 O A:HOH419 4.5 10.7 1.0 OD1 A:ASN139 4.5 14.6 1.0 CA A:TYR134 4.6 12.0 1.0 CB A:ASP142 4.6 11.3 1.0 CA A:GLY107 4.6 13.0 1.0 O A:ASP87 4.7 13.5 1.0 CB A:PHE133 4.7 11.7 1.0 CE1 A:HIS147 4.7 11.9 1.0 OD1 A:ASP87 4.8 12.4 1.0

A.C.Almeida, V.J.Osterne, M.Q.Santiago, V.R.Pinto-Junior, J.C.Silva-Filho, C.F.Lossio, F.L.Nascimento, R.P.Almeida, C.S.Teixeira, R.B.Leal, P.Delatorre, B.A.Rocha, A.M.Assreuy, K.S.Nascimento, B.S.Cavada. Structural Analysis of Centrolobium Tomentosum Seed Lectin with Inflammatory Activity. Arch.Biochem.Biophys. V. 596 73 2016.
ISSN: ESSN 1096-0384
PubMed: 26946944
DOI: 10.1016/J.ABB.2016.03.001