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Calcium in PDB 5fql: Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase

Enzymatic activity of Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase

All present enzymatic activity of Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase:
3.1.6.13;

Protein crystallography data

The structure of Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase, PDB code: 5fql was solved by M.Demydchuk, C.H.Hill, A.Zhou, G.Bunkoczi, P.E.Stein, D.Marchesan, J.E.Deane, R.J.Read, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.53 / 2.30
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 71.050, 71.050, 285.879, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 20.8

Other elements in 5fql:

The structure of Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase (pdb code 5fql). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase, PDB code: 5fql:

Calcium binding site 1 out of 1 in 5fql

Go back to Calcium Binding Sites List in 5fql
Calcium binding site 1 out of 1 in the Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Insights Into Hunter Syndrome From the Structure of Iduronate-2- Sulfatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1551

b:55.0
occ:1.00
 NE2 A:HIS335 2.3 52.7 1.0
OD1 A:ASP46 2.3 47.3 1.0
OS1 A:ALS84 2.3 62.0 1.0
OD2 A:ASP334 2.3 44.6 1.0
OD1 A:ASP45 2.4 41.7 1.0
OS4 A:ALS84 2.5 76.7 1.0
S A:ALS84 2.9 78.0 1.0
CE1 A:HIS335 3.0 52.1 1.0
HE1 A:HIS335 3.1 62.5 1.0
CG A:ASP334 3.2 48.9 1.0
CD2 A:HIS335 3.2 50.3 1.0
OD1 A:ASP334 3.3 50.1 1.0
CG A:ASP45 3.4 45.2 1.0
CG A:ASP46 3.4 46.2 1.0
HD2 A:HIS229 3.4 57.6 1.0
HD2 A:HIS335 3.5 60.4 1.0
CB A:ALS84 3.6 54.1 1.0
H A:ASP46 3.6 55.3 1.0
HE3 A:LYS347 3.7 59.9 1.0
CA A:ALS84 3.8 49.9 1.0
HH21 A:ARG88 3.8 48.7 1.0
OD2 A:ASP45 3.9 41.4 1.0
OS2 A:ALS84 3.9 74.7 1.0
OD2 A:ASP46 4.0 44.8 1.0
OS3 A:ALS84 4.0 74.7 1.0
HZ3 A:LYS347 4.0 59.4 1.0
HE A:ARG88 4.0 54.3 1.0
HA A:ASP45 4.0 55.6 1.0
N A:ASP46 4.0 46.0 1.0
HZ1 A:LYS135 4.0 55.6 1.0
ND1 A:HIS335 4.0 52.6 1.0
N A:ALS84 4.0 47.1 1.0
CG A:HIS335 4.2 48.8 1.0
HZ2 A:LYS347 4.2 59.4 1.0
OG A:ALS84 4.2 51.4 1.0
HZ2 A:LYS135 4.2 55.6 1.0
CD2 A:HIS229 4.3 48.0 1.0
HA A:ASP46 4.3 53.5 1.0
NZ A:LYS347 4.4 49.5 1.0
CE A:LYS347 4.5 49.9 1.0
CA A:ASP46 4.5 44.6 1.0
CA A:ASP45 4.5 46.4 1.0
NZ A:LYS135 4.5 46.3 1.0
CB A:ASP45 4.5 44.2 1.0
CB A:ASP46 4.6 45.8 1.0
CB A:ASP334 4.6 46.9 1.0
C A:ASP45 4.6 43.9 1.0
HA A:VAL83 4.7 57.3 1.0
HE2 A:LYS135 4.7 55.2 1.0
HB2 A:ASP334 4.7 56.3 1.0
NH2 A:ARG88 4.7 40.5 1.0
HD1 A:HIS335 4.7 63.1 1.0
NE A:ARG88 4.8 45.3 1.0
C A:VAL83 4.9 50.4 1.0
HD2 A:LYS347 4.9 59.4 1.0
NE2 A:HIS229 5.0 50.3 1.0

Reference:

M.Demydchuk, C.H.Hill, A.Zhou, G.Bunkoczi, P.E.Stein, D.Marchesan, J.E.Deane, R.J.Read. Insights Into Hunter Syndrome From the Structure of Iduronate-2-Sulfatase. Nat Commun V. 8 15786 2017.
ISSN: ESSN 2041-1723
PubMed: 28593992
DOI: 10.1038/NCOMMS15786
Page generated: Sat Dec 12 05:25:27 2020

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