Calcium in PDB 5fty: Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)

The structure of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form), PDB code: 5fty was solved by A.Dordic, T.Pavkov-Keller, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.987 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.668, 48.988, 91.812, 90.00, 99.86, 90.00
R / Rfree (%)	26.78 / 30.73

The binding sites of Calcium atom in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) (pdb code 5fty). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form), PDB code: 5fty:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca900 b:34.3 occ:1.00 OD1 A:ASN673 2.3 21.0 1.0 O A:ASP675 2.4 16.0 1.0 OD2 A:ASP659 2.4 17.4 1.0 OD1 A:ASP660 2.4 14.2 1.0 O A:LYS662 2.7 19.4 1.0 CG A:ASP659 3.5 16.5 1.0 CG A:ASN673 3.5 17.6 1.0 CG A:ASP660 3.6 19.4 1.0 C A:ASP675 3.6 22.9 1.0 CB A:ASP659 3.8 13.2 1.0 C A:LYS662 3.9 19.0 1.0 OD2 A:ASP660 4.0 29.0 1.0 N A:LYS662 4.1 23.0 1.0 ND2 A:ASN673 4.2 21.3 1.0 N A:ASP675 4.3 17.3 1.0 N A:ASP660 4.3 10.8 1.0 OD1 A:ASP675 4.5 19.5 1.0 N A:VAL676 4.5 18.7 1.0 CA A:ASP675 4.5 20.6 1.0 CA A:LYS662 4.6 20.6 1.0 CA A:VAL676 4.6 17.5 1.0 N A:GLY661 4.6 16.6 1.0 C A:ASN673 4.6 19.6 1.0 OD1 A:ASP659 4.6 19.2 1.0 CA A:ASN673 4.6 20.4 1.0 O A:ASN673 4.6 22.7 1.0 CB A:ASN673 4.7 18.3 1.0 CB A:ASP660 4.8 14.0 1.0 N A:ILE663 4.9 17.1 1.0 CG2 A:VAL676 4.9 17.8 1.0 CA A:ASP660 4.9 11.9 1.0 N A:ASN674 5.0 16.3 1.0

Calcium binding site 2 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:52.8 occ:1.00 O A:VAL709 2.4 29.0 1.0 OE2 A:GLU702 2.4 23.6 1.0 OD1 A:ASN707 2.6 24.9 1.0 OE2 A:GLU737 2.7 28.2 1.0 OE1 A:GLU737 2.7 27.0 1.0 OD1 A:ASP705 2.8 29.4 1.0 CD A:GLU737 3.0 28.3 1.0 CD A:GLU702 3.3 26.6 1.0 C A:VAL709 3.5 32.8 1.0 CG A:GLU702 3.6 31.4 1.0 CG A:ASN707 3.7 26.5 1.0 CG A:ASP705 3.9 31.9 1.0 CA A:ASP705 4.1 31.7 1.0 ND2 A:ASN707 4.2 24.9 1.0 N A:VAL709 4.2 28.8 1.0 N A:THR706 4.3 24.8 1.0 CA A:VAL709 4.3 30.2 1.0 CB A:ASP705 4.3 26.5 1.0 N A:ILE710 4.4 31.7 1.0 CG A:GLU737 4.4 27.0 1.0 OE1 A:GLU702 4.5 27.8 1.0 CA A:ILE710 4.5 28.5 1.0 CB A:VAL709 4.6 28.1 1.0 N A:ASN707 4.6 25.0 1.0 C A:ASP705 4.8 31.4 1.0 CG1 A:ILE710 4.9 33.4 1.0 N A:GLY708 4.9 20.9 1.0 OD2 A:ASP705 5.0 30.6 1.0

Calcium binding site 3 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca902 b:63.6 occ:1.00 O A:THR806 2.3 65.9 1.0 OD1 A:ASP802 2.3 37.7 1.0 O A:SER803 2.5 41.1 1.0 OG1 A:THR806 2.7 68.0 1.0 O A:THR809 3.0 51.5 1.0 C A:THR806 3.0 62.3 1.0 CG A:ASP802 3.3 32.3 1.0 C A:SER803 3.6 44.6 1.0 OD2 A:ASP802 3.7 28.9 1.0 N A:PRO807 3.8 64.7 1.0 CB A:THR806 3.8 57.6 1.0 CA A:THR806 3.8 63.4 1.0 CA A:PRO807 3.9 64.5 1.0 C A:THR809 4.0 50.0 1.0 N A:THR806 4.1 58.7 1.0 N A:SER803 4.1 30.6 1.0 OE1 A:GLU811 4.2 47.1 1.0 C A:PRO807 4.4 68.3 1.0 CA A:SER803 4.5 44.9 1.0 OE2 A:GLU811 4.5 41.2 1.0 C A:ASP802 4.6 32.9 1.0 N A:ALA804 4.6 40.1 1.0 CB A:ASP802 4.6 29.7 1.0 CA A:ASN810 4.6 35.6 1.0 N A:THR809 4.7 59.2 1.0 CD A:GLU811 4.7 46.3 1.0 CA A:ALA804 4.7 42.7 1.0 N A:ASN810 4.7 49.0 1.0 CG2 A:THR806 4.7 46.0 1.0 N A:ASN808 4.8 75.3 1.0 CA A:ASP802 4.8 35.7 1.0 C A:ALA804 4.9 46.3 1.0 O A:PRO807 4.9 64.5 1.0 CA A:THR809 5.0 56.7 1.0

Calcium binding site 4 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca903 b:52.5 occ:1.00 O A:SER666 2.4 35.6 1.0 OD1 A:ASN674 2.4 25.0 1.0 OE1 A:GLU669 2.5 36.1 1.0 O A:ASP664 2.5 22.4 1.0 OE2 A:GLU669 2.5 22.7 1.0 CD A:GLU669 2.8 28.2 1.0 C A:SER666 3.4 34.8 1.0 C A:ASP664 3.4 27.9 1.0 CG A:ASN674 3.5 23.6 1.0 CB A:ASP664 3.8 27.5 1.0 N A:SER666 3.8 23.3 1.0 ND2 A:ASN674 4.1 25.4 1.0 CA A:SER666 4.1 31.4 1.0 C A:LYS665 4.1 27.1 1.0 CA A:ASP664 4.2 25.0 1.0 CG A:GLU669 4.3 24.6 1.0 N A:LYS665 4.3 28.1 1.0 N A:ALA667 4.4 34.1 1.0 CG A:ASP664 4.5 28.4 1.0 CA A:LYS665 4.6 30.1 1.0 CB A:SER666 4.6 34.2 1.0 O A:ASN673 4.6 22.7 1.0 O A:LYS665 4.6 21.1 1.0 CA A:ALA667 4.7 40.0 1.0 CB A:ASN674 4.8 15.7 1.0 C A:ASN673 4.8 19.6 1.0 N A:ASP664 4.8 21.1 1.0 OD1 A:ASP664 4.8 31.2 1.0 CA A:ASN674 4.9 14.8 1.0 N A:ASN673 5.0 23.4 1.0

Calcium binding site 5 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca900 b:51.0 occ:1.00 OD1 B:ASN674 2.3 24.3 1.0 O B:SER666 2.3 26.6 1.0 OE1 B:GLU669 2.7 35.2 1.0 OE2 B:GLU669 2.7 20.7 1.0 O B:ASP664 2.8 21.1 1.0 CD B:GLU669 3.1 31.6 1.0 CG B:ASN674 3.3 29.7 1.0 C B:SER666 3.4 33.5 1.0 ND2 B:ASN674 3.5 29.6 1.0 C B:ASP664 4.0 23.0 1.0 N B:SER666 4.2 33.3 1.0 N B:ALA667 4.2 38.2 1.0 CA B:ALA667 4.3 38.6 1.0 CA B:SER666 4.3 34.4 1.0 C B:LYS665 4.4 42.2 1.0 CG B:GLU669 4.6 25.7 1.0 CB B:ASP664 4.6 30.6 1.0 O B:LYS665 4.6 32.4 1.0 CB B:ASN674 4.7 20.0 1.0 C B:ALA667 4.7 34.4 1.0 CB B:SER666 4.8 35.0 1.0 CA B:ASP664 4.9 28.8 1.0 N B:LYS665 4.9 25.2 1.0 O B:ALA667 4.9 32.6 1.0 CA B:LYS665 4.9 33.9 1.0

Calcium binding site 6 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca901 b:31.7 occ:1.00 OD1 B:ASN673 2.4 19.5 1.0 O B:ASP675 2.4 27.2 1.0 OD2 B:ASP659 2.4 16.9 1.0 O B:HOH2001 2.5 19.3 1.0 OD1 B:ASP660 2.5 14.4 1.0 O B:LYS662 2.7 15.4 1.0 CG B:ASP659 3.3 21.5 1.0 CG B:ASN673 3.5 17.1 1.0 CB B:ASP659 3.6 15.9 1.0 C B:ASP675 3.6 26.7 1.0 CG B:ASP660 3.7 13.3 1.0 C B:LYS662 3.8 18.5 1.0 OD1 B:ASP675 3.9 29.8 1.0 N B:LYS662 4.0 18.7 1.0 ND2 B:ASN673 4.1 12.4 1.0 N B:ASP660 4.2 13.2 1.0 OD2 B:ASP660 4.3 13.7 1.0 N B:ASP675 4.3 20.0 1.0 CA B:LYS662 4.4 17.1 1.0 CA B:VAL676 4.4 20.1 1.0 N B:VAL676 4.5 24.1 1.0 N B:GLY661 4.5 15.0 1.0 OD1 B:ASP659 4.5 19.7 1.0 CA B:ASP675 4.6 26.7 1.0 C B:ASN673 4.7 20.7 1.0 CB B:ASN673 4.7 21.6 1.0 CA B:ASN673 4.7 18.8 1.0 CG2 B:VAL676 4.8 18.9 1.0 CB B:ASP660 4.8 14.0 1.0 O B:ASN673 4.8 21.2 1.0 CG B:ASP675 4.8 22.6 1.0 CA B:ASP660 4.9 14.8 1.0 CA B:ASP659 4.9 12.4 1.0 N B:ILE663 4.9 20.0 1.0 C B:GLY661 5.0 17.3 1.0 C B:ASP660 5.0 14.4 1.0

Calcium binding site 7 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca902 b:53.2 occ:1.00 OD1 B:ASN707 2.4 31.8 1.0 OE1 B:GLU702 2.4 37.6 1.0 OE1 B:GLU737 2.4 26.6 1.0 OE2 B:GLU737 2.9 29.0 1.0 CG B:ASN707 2.9 35.5 1.0 O B:VAL709 3.0 29.0 1.0 CD B:GLU737 3.0 33.6 1.0 OD1 B:ASP705 3.1 37.5 1.0 ND2 B:ASN707 3.2 33.6 1.0 CD B:GLU702 3.3 44.5 1.0 OE2 B:GLU702 3.9 45.7 1.0 N B:THR706 3.9 34.8 1.0 N B:ASN707 4.0 34.8 1.0 CG B:ASP705 4.0 42.0 1.0 C B:VAL709 4.1 27.9 1.0 CB B:ASN707 4.2 41.4 1.0 CG B:GLU702 4.2 51.1 1.0 N B:VAL709 4.4 38.8 1.0 CA B:ASP705 4.5 39.1 1.0 CG B:GLU737 4.5 34.5 1.0 CB B:VAL709 4.5 43.2 1.0 CB B:GLU702 4.6 46.7 1.0 CA B:ASN707 4.6 38.1 1.0 CA B:VAL709 4.6 36.0 1.0 OG1 B:THR706 4.6 42.6 1.0 C B:THR706 4.6 43.4 1.0 OD2 B:ASP705 4.7 39.1 1.0 C B:ASP705 4.8 37.4 1.0 CA B:THR706 4.8 37.3 1.0 CB B:ASP705 4.8 28.4 1.0 N B:GLY708 4.9 35.6 1.0

Calcium binding site 8 out of 8 in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca903 b:44.7 occ:1.00 O B:THR806 2.3 43.6 1.0 OD1 B:ASP802 2.3 26.7 1.0 O B:THR809 2.5 38.8 1.0 O B:SER803 2.5 27.9 1.0 OG1 B:THR806 2.7 40.1 1.0 OE1 B:GLU811 3.1 33.1 1.0 C B:THR809 3.3 37.2 1.0 C B:THR806 3.4 38.0 1.0 OE2 B:GLU811 3.4 30.8 1.0 CG B:ASP802 3.5 27.7 1.0 CD B:GLU811 3.6 37.1 1.0 C B:SER803 3.6 26.9 1.0 CB B:THR806 3.8 37.2 1.0 N B:SER803 3.8 25.6 1.0 N B:ASN810 3.9 29.2 1.0 CA B:ASN810 3.9 30.0 1.0 CA B:THR806 4.0 35.2 1.0 OD2 B:ASP802 4.1 28.5 1.0 N B:THR806 4.2 40.0 1.0 N B:THR809 4.2 35.7 1.0 CA B:SER803 4.3 33.6 1.0 N B:GLU811 4.3 25.6 1.0 CA B:THR809 4.3 37.9 1.0 N B:PRO807 4.5 38.2 1.0 C B:ASP802 4.5 25.8 1.0 N B:ALA804 4.6 23.6 1.0 C B:ASN810 4.6 30.0 1.0 CB B:ASP802 4.7 28.4 1.0 CA B:ASP802 4.7 26.1 1.0 CA B:PRO807 4.8 39.1 1.0 CA B:ALA804 4.8 33.0 1.0 CG2 B:THR809 4.8 33.5 1.0 C B:PRO807 4.8 32.9 1.0 CB B:SER803 4.9 33.8 1.0 CG B:GLU811 5.0 25.4 1.0

T.Pavkov-Keller, A.Dordic, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller. Structure of Surface Layer Protein Sbsc, Domains 6-7 (Monoclinic Form) To Be Published.