Atomistry » Calcium » PDB 5g39-5gth » 5g3a
Atomistry »
  Calcium »
    PDB 5g39-5gth »
      5g3a »

Calcium in PDB 5g3a: Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10

Protein crystallography data

The structure of Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10, PDB code: 5g3a was solved by M.Bommer, A.N.Bondar, A.Zouni, H.Dobbek, H.Dau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.99 / 1.22
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 54.695, 54.695, 192.405, 90.00, 90.00, 120.00
R / Rfree (%) 15.4 / 17.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10 (pdb code 5g3a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10, PDB code: 5g3a:

Calcium binding site 1 out of 1 in 5g3a

Go back to Calcium Binding Sites List in 5g3a
Calcium binding site 1 out of 1 in the Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Psbo Subunit of Photosystem II, Beta Barrel Domain at 100K, pH 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca191

b:10.3
occ:1.00
O A:HOH2129 2.3 12.8 1.0
O A:VAL152 2.4 10.9 1.0
OD1 A:ASN151 2.4 11.5 1.0
O A:HOH2127 2.4 11.6 1.0
O A:THR131 2.4 11.3 1.0
O A:HOH2128 2.4 12.3 1.0
O A:HOH2079 2.4 11.2 1.0
HA A:SER132 3.3 13.6 1.0
CG A:ASN151 3.5 10.9 1.0
C A:VAL152 3.5 10.1 1.0
C A:THR131 3.6 11.0 1.0
HA A:ALA153 3.6 12.0 1.0
HD22 A:ASN151 3.7 16.8 1.0
ND2 A:ASN151 4.0 14.0 1.0
CA A:SER132 4.2 11.3 1.0
N A:VAL152 4.2 9.8 1.0
HB A:THR131 4.3 14.2 1.0
N A:SER132 4.3 10.7 1.0
H A:VAL152 4.4 11.7 1.0
C A:ASN151 4.4 9.6 1.0
N A:ALA153 4.4 9.9 1.0
CA A:ALA153 4.4 10.0 1.0
O A:HOH2132 4.4 12.9 1.0
CA A:VAL152 4.5 10.3 1.0
HA A:THR131 4.5 13.4 1.0
HA A:ASN151 4.6 11.7 1.0
HB A:VAL152 4.6 11.7 1.0
CA A:THR131 4.6 11.2 1.0
O A:THR133 4.7 11.2 1.0
O A:HOH2140 4.7 17.6 1.0
HB3 A:ALA153 4.7 15.2 1.0
CB A:ASN151 4.7 10.8 1.0
OD1 A:ASP134 4.7 15.6 1.0
C A:SER132 4.7 11.8 1.0
O A:ASN151 4.8 10.2 1.0
CA A:ASN151 4.8 9.7 1.0
HD21 A:ASN151 4.9 16.8 1.0
CB A:THR131 5.0 11.8 1.0
O A:HOH2115 5.0 12.9 1.0

Reference:

M.Bommer, A.N.Bondar, A.Zouni, H.Dobbek, H.Dau. Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters As Putative Proton Transfer Relays and Structural Switches Biochemistry V. 55 4626 2016.
ISSN: ISSN 0006-2960
PubMed: 27454911
DOI: 10.1021/ACS.BIOCHEM.6B00441
Page generated: Sat Dec 12 05:26:08 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy