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Calcium in PDB 5ggm: The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles

Other elements in 5ggm:

The structure of The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles also contains other interesting chemical elements:

Terbium (Tb) 10 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles (pdb code 5ggm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles, PDB code: 5ggm:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 5ggm

Go back to Calcium Binding Sites List in 5ggm
Calcium binding site 1 out of 3 in the The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:3.1
occ:1.00
HB2 A:ASP22 2.6 0.0 1.0
HG3 A:GLU31 2.6 0.0 1.0
OD2 A:ASP20 2.7 5.0 1.0
CD A:GLU31 3.0 3.2 1.0
OE2 A:GLU31 3.0 4.1 1.0
OD1 A:ASP24 3.2 10.9 1.0
CG A:GLU31 3.3 3.7 1.0
OE1 A:GLU31 3.5 5.6 1.0
OD1 A:ASP22 3.5 8.0 1.0
HB2 A:ASP24 3.5 0.0 1.0
CB A:ASP22 3.5 11.2 1.0
O A:THR26 3.6 7.6 1.0
CG A:ASP20 3.8 5.3 1.0
CG A:ASP22 3.8 11.4 1.0
H A:ASP22 3.8 0.0 1.0
HG23 A:THR28 3.8 0.0 1.0
H A:THR28 4.0 0.0 1.0
HB3 A:ASP22 4.0 0.0 1.0
HG2 A:GLU31 4.0 0.0 1.0
OG1 A:THR28 4.0 7.6 1.0
HA A:ASP20 4.1 0.0 1.0
CG A:ASP24 4.2 11.8 1.0
H A:ASP24 4.2 0.0 1.0
CB A:GLU31 4.2 2.7 1.0
OD1 A:ASP20 4.2 4.7 1.0
HB2 A:GLU31 4.2 0.0 1.0
HB3 A:GLU31 4.3 0.0 1.0
HA A:ILE27 4.3 0.0 1.0
CB A:ASP24 4.3 12.5 1.0
N A:ASP22 4.6 10.3 1.0
CA A:ASP22 4.6 10.0 1.0
HG1 A:THR28 4.7 0.0 1.0
OD2 A:ASP22 4.8 14.1 1.0
CG2 A:THR28 4.8 7.8 1.0
N A:THR28 4.8 5.5 1.0
C A:THR26 4.9 8.1 1.0
CA A:ASP20 4.9 5.1 1.0
H A:GLY23 4.9 0.0 1.0
CB A:ASP20 5.0 3.5 1.0
H A:LYS21 5.0 0.0 1.0
H A:THR26 5.0 0.0 1.0
HB3 A:ASP24 5.0 0.0 1.0

Calcium binding site 2 out of 3 in 5ggm

Go back to Calcium Binding Sites List in 5ggm
Calcium binding site 2 out of 3 in the The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:3.1
occ:1.00
HB2 A:TYR99 2.6 0.0 1.0
HB3 A:ASN97 2.6 0.0 1.0
OD1 A:ASP93 2.9 11.1 1.0
HB2 A:ASP95 2.9 0.0 1.0
OE1 A:GLU104 3.2 6.8 1.0
OE2 A:GLU104 3.2 5.8 1.0
OD1 A:ASN97 3.2 7.6 1.0
CG A:ASP95 3.3 8.9 1.0
O A:TYR99 3.3 7.7 0.5
OD1 A:ASP95 3.4 6.7 1.0
CB A:ASP95 3.5 6.5 1.0
H A:TYR99 3.5 0.0 1.0
CD A:GLU104 3.6 5.3 1.0
CB A:TYR99 3.6 7.8 0.5
CB A:ASN97 3.6 5.9 1.0
OD2 A:ASP95 3.7 10.2 1.0
HB3 A:ASP95 3.8 0.0 1.0
HB3 A:TYR99 3.8 0.0 1.0
CG A:ASN97 3.8 4.4 1.0
HB2 A:ASN97 4.0 0.0 1.0
CG A:ASP93 4.0 10.8 1.0
C A:TYR99 4.0 7.5 0.5
CA A:TYR99 4.1 7.6 0.5
N A:TYR99 4.2 7.5 0.5
H A:ASN97 4.2 0.0 1.0
OD2 A:ASP93 4.5 7.3 1.0
HD1 A:TYR99 4.6 0.0 1.0
CG A:TYR99 4.7 7.3 0.5
CA A:ASN97 4.7 5.9 1.0
H A:GLY98 4.8 0.0 1.0
H A:ASP95 4.8 0.0 1.0
N A:ASN97 4.9 6.4 1.0
CA A:ASP95 4.9 7.1 1.0

Calcium binding site 3 out of 3 in 5ggm

Go back to Calcium Binding Sites List in 5ggm
Calcium binding site 3 out of 3 in the The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:3.1
occ:1.00
HB3 A:ASP133 2.6 0.0 1.0
HD21 A:ASN137 2.8 0.0 1.0
HB2 A:ASP133 2.8 0.0 1.0
OE1 A:GLN135 3.1 22.1 1.0
CB A:ASP133 3.1 4.8 1.0
ND2 A:ASN137 3.2 9.8 1.0
OE2 A:GLU140 3.2 10.1 1.0
HD22 A:ASN137 3.3 0.0 1.0
OD1 A:ASP133 3.4 9.6 1.0
OD2 A:ASP131 3.5 5.8 1.0
OD1 A:ASP129 3.5 9.1 1.0
O A:GLN135 3.5 9.4 1.0
OE1 A:GLU140 3.6 13.4 1.0
CD A:GLU140 3.8 9.6 1.0
CG A:ASP133 3.8 6.3 1.0
HB2 A:ASN137 3.9 0.0 1.0
CG A:ASN137 4.0 7.7 1.0
HB2 A:ASP131 4.0 0.0 1.0
HB3 A:GLN135 4.2 0.0 1.0
CD A:GLN135 4.3 15.0 1.0
H A:ASP133 4.3 0.0 1.0
CG A:ASP129 4.4 9.7 1.0
C A:GLN135 4.4 10.5 1.0
H A:GLN135 4.4 0.0 1.0
H A:ASN137 4.4 0.0 1.0
CB A:ASN137 4.5 6.3 1.0
CA A:ASP133 4.5 4.6 1.0
CG A:ASP131 4.5 5.6 1.0
OD2 A:ASP129 4.5 6.8 1.0
HA A:VAL136 4.6 0.0 1.0
HE22 A:GLN135 4.6 0.0 1.0
N A:ASN137 4.7 6.5 1.0
N A:ASP133 4.7 3.4 1.0
CB A:ASP131 4.8 3.1 1.0
OD1 A:ASN137 4.8 12.0 1.0
NE2 A:GLN135 4.9 21.9 1.0
OD2 A:ASP133 5.0 5.4 1.0

Reference:

G.Xu, K.Cheng, Q.Wu, M.Liu, C.Li. The uc(Nmr) Structure of Calmodulin in Ctab Reverse Micelles To Be Published.
Page generated: Sat Dec 12 05:26:24 2020

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