Atomistry » Calcium » PDB 5g39-5gth » 5gjw
Atomistry »
  Calcium »
    PDB 5g39-5gth »
      5gjw »

Calcium in PDB 5gjw: Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map (pdb code 5gjw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map, PDB code: 5gjw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 1 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1902

b:0.3
occ:1.00
OE1 A:GLU292 3.0 0.5 1.0
OE1 A:GLU614 3.3 0.7 1.0
OE1 A:GLU1014 3.3 0.9 1.0
CA A:CA1903 3.4 0.7 1.0
O A:GLY1322 3.7 0.5 1.0
O A:PHE1013 3.9 0.7 1.0
OE1 A:GLU1323 4.2 0.6 1.0
CD A:GLU292 4.2 0.7 1.0
CD A:GLU614 4.4 0.0 1.0
O A:MET291 4.4 0.2 1.0
CD A:GLU1014 4.5 0.0 1.0
C A:GLY1322 4.5 0.5 1.0
CB A:GLU292 4.6 0.6 1.0
CA A:GLU614 4.7 76.5 1.0
CG A:GLU292 4.7 0.3 1.0
CA A:GLU292 4.8 0.2 1.0
O A:GLY613 4.9 70.5 1.0
CA A:GLU1323 4.9 88.5 1.0
OE2 A:GLU614 4.9 0.8 1.0
CB A:GLU1014 5.0 0.5 1.0
CA A:GLU1014 5.0 0.1 1.0

Calcium binding site 2 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 2 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1903

b:0.7
occ:1.00
CA A:CA1902 3.4 0.3 1.0
O A:THR1321 4.3 0.7 1.0
O A:MET291 4.4 0.2 1.0
O A:PHE1013 4.5 0.7 1.0
O A:THR1012 4.8 0.2 1.0

Calcium binding site 3 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 3 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca1201

b:0.3
occ:1.00
OG F:SER265 2.8 91.7 1.0
CG2 F:THR333 2.9 0.9 1.0
CB F:SER265 3.3 97.5 1.0
OG1 F:THR333 3.5 0.3 1.0
OG F:SER263 3.6 69.1 1.0
OD2 A:ASP78 3.6 94.5 1.0
OD1 A:ASP78 3.7 0.2 1.0
CB F:THR333 3.8 0.8 1.0
CG A:ASP78 3.9 0.3 1.0
OD1 F:ASP365 4.1 0.4 1.0
O F:GLY366 4.3 0.1 1.0
CB F:SER263 4.6 80.1 1.0
CA F:SER265 4.7 76.3 1.0
OD2 F:ASP365 4.7 0.0 1.0
OD2 F:ASP261 4.7 0.6 1.0
CE A:MET74 4.7 0.6 1.0
N F:SER265 4.8 68.9 1.0
CG F:ASP365 4.9 0.1 1.0
N F:THR333 4.9 0.9 1.0
CA F:THR333 5.0 0.5 1.0

Reference:

J.P.Wu, Z.Yan, Z.Q.Li, X.Y.Qian, S.Lu, M.Q.Dong, Q.Zhou, N.Yan. Structure of the Voltage-Gated Calcium Channel CAV1.1 at 3.6 Angstrom Resolution Nature V. 537 191 2016.
ISSN: ESSN 1476-4687
PubMed: 27580036
DOI: 10.1038/NATURE19321
Page generated: Sun Jul 14 19:36:19 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy