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Calcium in PDB 5gjw: Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map (pdb code 5gjw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map, PDB code: 5gjw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 1 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1902

b:0.3
occ:1.00
OE1 A:GLU292 3.0 0.5 1.0
OE1 A:GLU614 3.3 0.7 1.0
OE1 A:GLU1014 3.3 0.9 1.0
CA A:CA1903 3.4 0.7 1.0
O A:GLY1322 3.7 0.5 1.0
O A:PHE1013 3.9 0.7 1.0
OE1 A:GLU1323 4.2 0.6 1.0
CD A:GLU292 4.2 0.7 1.0
CD A:GLU614 4.4 0.0 1.0
O A:MET291 4.4 0.2 1.0
CD A:GLU1014 4.5 0.0 1.0
C A:GLY1322 4.5 0.5 1.0
CB A:GLU292 4.6 0.6 1.0
CA A:GLU614 4.7 76.5 1.0
CG A:GLU292 4.7 0.3 1.0
CA A:GLU292 4.8 0.2 1.0
O A:GLY613 4.9 70.5 1.0
CA A:GLU1323 4.9 88.5 1.0
OE2 A:GLU614 4.9 0.8 1.0
CB A:GLU1014 5.0 0.5 1.0
CA A:GLU1014 5.0 0.1 1.0

Calcium binding site 2 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 2 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1903

b:0.7
occ:1.00
CA A:CA1902 3.4 0.3 1.0
O A:THR1321 4.3 0.7 1.0
O A:MET291 4.4 0.2 1.0
O A:PHE1013 4.5 0.7 1.0
O A:THR1012 4.8 0.2 1.0

Calcium binding site 3 out of 3 in 5gjw

Go back to Calcium Binding Sites List in 5gjw
Calcium binding site 3 out of 3 in the Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Mammalian Voltage-Gated Calcium Channel CAV1.1 Complex For Classii Map within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca1201

b:0.3
occ:1.00
OG F:SER265 2.8 91.7 1.0
CG2 F:THR333 2.9 0.9 1.0
CB F:SER265 3.3 97.5 1.0
OG1 F:THR333 3.5 0.3 1.0
OG F:SER263 3.6 69.1 1.0
OD2 A:ASP78 3.6 94.5 1.0
OD1 A:ASP78 3.7 0.2 1.0
CB F:THR333 3.8 0.8 1.0
CG A:ASP78 3.9 0.3 1.0
OD1 F:ASP365 4.1 0.4 1.0
O F:GLY366 4.3 0.1 1.0
CB F:SER263 4.6 80.1 1.0
CA F:SER265 4.7 76.3 1.0
OD2 F:ASP365 4.7 0.0 1.0
OD2 F:ASP261 4.7 0.6 1.0
CE A:MET74 4.7 0.6 1.0
N F:SER265 4.8 68.9 1.0
CG F:ASP365 4.9 0.1 1.0
N F:THR333 4.9 0.9 1.0
CA F:THR333 5.0 0.5 1.0

Reference:

J.P.Wu, Z.Yan, Z.Q.Li, X.Y.Qian, S.Lu, M.Q.Dong, Q.Zhou, N.Yan. Structure of the Voltage-Gated Calcium Channel CAV1.1 at 3.6 Angstrom Resolution Nature V. 537 191 2016.
ISSN: ESSN 1476-4687
PubMed: 27580036
DOI: 10.1038/NATURE19321
Page generated: Sun Jul 14 19:36:19 2024

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