Calcium in PDB 5gnf: Crystal Structure of Anti-Crispr Protein ACRF3

The structure of Crystal Structure of Anti-Crispr Protein ACRF3, PDB code: 5gnf was solved by J.Wang, Y.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.47 / 1.50
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	84.944, 84.944, 63.155, 90.00, 90.00, 120.00
R / Rfree (%)	17 / 19.2

The binding sites of Calcium atom in the Crystal Structure of Anti-Crispr Protein ACRF3 (pdb code 5gnf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Anti-Crispr Protein ACRF3, PDB code: 5gnf:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of Anti-Crispr Protein ACRF3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Anti-Crispr Protein ACRF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:15.4 occ:1.00 OE1 A:GLU66 2.3 15.7 1.0 O A:SER2 2.4 16.2 1.0 O A:HOH377 2.4 15.5 1.0 OE2 A:GLU70 2.4 15.1 1.0 OE1 A:GLU70 2.5 17.1 1.0 CD A:GLU70 2.8 16.3 1.0 CD A:GLU66 3.4 19.1 1.0 C A:SER2 3.5 17.3 1.0 CG A:GLU66 3.8 16.4 1.0 CA A:ASN3 3.9 15.2 1.0 OG A:SER0 4.0 24.3 1.0 OG A:SER2 4.0 20.1 1.0 N A:ASN3 4.1 14.1 1.0 O A:HOH346 4.3 18.6 1.0 CG A:GLU70 4.3 16.6 1.0 O A:HOH333 4.5 22.8 1.0 OE2 A:GLU66 4.5 20.9 1.0 CA A:SER2 4.6 18.7 1.0 CB A:ASN3 4.8 15.8 1.0 N A:SER2 4.8 17.7 1.0 N A:THR4 4.8 15.8 1.0 CB A:SER2 4.9 16.9 1.0 C A:ASN3 5.0 16.3 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of Anti-Crispr Protein ACRF3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Anti-Crispr Protein ACRF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:15.6 occ:1.00 NE2 A:HIS65 2.1 26.0 1.0 CE1 A:HIS65 3.1 20.7 1.0 CD2 A:HIS65 3.1 21.9 1.0 ND1 A:HIS65 4.2 21.5 1.0 OD2 B:ASP61 4.2 21.3 1.0 O A:HOH447 4.2 29.5 1.0 CG A:HIS65 4.2 22.3 1.0 OE2 A:GLU66 4.7 20.9 1.0 CG B:ASP61 4.9 22.8 1.0 CB A:GLU66 4.9 16.5 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of Anti-Crispr Protein ACRF3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Anti-Crispr Protein ACRF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:23.1 occ:1.00 O B:HOH331 2.3 31.1 1.0 OD1 B:ASN3 2.4 27.3 1.0 O B:SER2 2.4 22.5 1.0 O B:HOH332 2.4 24.8 1.0 C B:SER2 3.4 22.2 1.0 CG B:ASN3 3.6 23.9 1.0 OE2 B:GLU70 4.1 31.0 1.0 CA B:ASN3 4.1 18.5 1.0 N B:SER2 4.2 22.2 1.0 OE2 B:GLU66 4.2 24.7 1.0 N B:ASN3 4.2 20.5 1.0 O B:HOH379 4.3 41.9 1.0 CA B:SER2 4.5 25.3 1.0 CB B:ASN3 4.5 23.9 1.0 ND2 B:ASN3 4.5 24.8 1.0 O B:HOH413 4.6 27.4 1.0 O B:HOH321 4.8 26.5 1.0 O B:HOH396 4.8 41.6 1.0 O B:HOH314 5.0 26.8 1.0

J.Wang, J.Ma, Z.Cheng, X.Meng, L.You, M.Wang, X.Zhang, Y.Wang. A Crispr Evolutionary Arms Race: Structural Insights Into Viral Anti-Crispr/Cas Responses Cell Res. V. 26 1165 2016.
ISSN: ISSN 1001-0602
PubMed: 27585537
DOI: 10.1038/CR.2016.103