Calcium in PDB 5h0p: Crystal Structure of Ef-Hand Protein Mutant

The structure of Crystal Structure of Ef-Hand Protein Mutant, PDB code: 5h0p was solved by K.R.Park, J.Y.An, J.Y.Kang, J.G.Lee, H.S.Youn, Y.Lee, S.A.Mun, C.D.Jun, W.K.Song, S.H.Eom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.80 / 1.86
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.675, 51.105, 53.650, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.6

The binding sites of Calcium atom in the Crystal Structure of Ef-Hand Protein Mutant (pdb code 5h0p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Ef-Hand Protein Mutant, PDB code: 5h0p:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Ef-Hand Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ef-Hand Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:35.5 occ:1.00 OD1 A:ASP105 2.3 40.0 1.0 OE2 A:GLU116 2.3 41.3 1.0 OD1 A:ASP109 2.4 51.6 1.0 O A:PHE111 2.4 31.7 1.0 OE1 A:GLU116 2.5 40.3 1.0 O A:HOH303 2.6 41.6 1.0 O A:HOH337 2.6 36.0 1.0 CD A:GLU116 2.7 39.1 1.0 CG A:ASP109 3.2 49.1 1.0 CG A:ASP105 3.3 43.1 1.0 C A:PHE111 3.4 32.6 1.0 OD2 A:ASP109 3.6 48.9 1.0 OD2 A:ASP105 4.1 45.5 1.0 N A:PHE111 4.1 33.8 1.0 CA A:ASP105 4.2 40.5 1.0 CA A:PHE111 4.2 31.0 1.0 N A:GLY107 4.2 51.0 1.0 CB A:ASP105 4.2 41.3 1.0 CG A:GLU116 4.2 34.6 1.0 N A:ILE112 4.4 30.9 1.0 OD2 A:ASP113 4.4 44.8 1.0 CA A:ILE112 4.4 28.1 1.0 N A:ASP109 4.5 53.6 1.0 CB A:ASP109 4.5 54.5 1.0 C A:ASP105 4.5 48.9 1.0 CB A:PHE111 4.5 36.2 1.0 N A:ASP113 4.5 36.9 1.0 N A:ALA106 4.5 55.5 1.0 CA A:GLY107 4.6 53.4 1.0 CG A:ASP113 4.8 35.2 1.0 O A:HOH323 4.8 52.6 1.0 N A:ARG108 4.8 52.4 1.0 CA A:ASP109 4.9 56.1 1.0 C A:GLY107 5.0 57.5 1.0 N A:GLY110 5.0 51.4 1.0 C A:ILE112 5.0 32.5 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Ef-Hand Protein Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Ef-Hand Protein Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:28.9 occ:1.00 OD1 A:ASP143 2.3 36.0 1.0 OD1 A:ASP141 2.3 26.9 1.0 OD1 A:ASP145 2.3 39.0 1.0 O A:LYS147 2.4 32.4 1.0 O A:HOH320 2.4 37.3 1.0 OE1 A:GLU152 2.5 33.6 1.0 OE2 A:GLU152 2.5 31.9 1.0 CD A:GLU152 2.8 30.5 1.0 CG A:ASP145 3.4 40.1 1.0 CG A:ASP143 3.4 41.0 1.0 CG A:ASP141 3.5 25.9 1.0 C A:LYS147 3.6 32.2 1.0 OD2 A:ASP145 3.8 41.2 1.0 OD2 A:ASP143 3.8 48.8 1.0 N A:LYS147 4.2 31.5 1.0 N A:ASP145 4.3 36.1 1.0 N A:ASP143 4.3 33.3 1.0 OD2 A:ASP141 4.3 33.2 1.0 CA A:ASP141 4.3 31.4 1.0 CB A:ASP141 4.4 24.4 1.0 CG A:GLU152 4.4 28.7 1.0 N A:SER149 4.4 27.9 1.0 CA A:LEU148 4.4 22.8 1.0 N A:LEU148 4.4 26.3 1.0 CA A:LYS147 4.5 30.3 1.0 N A:PHE144 4.6 33.2 1.0 CB A:ASP145 4.6 42.8 1.0 CB A:ASP143 4.6 38.3 1.0 C A:ASP143 4.6 41.2 1.0 C A:ASP141 4.7 37.5 1.0 CA A:ASP143 4.7 36.4 1.0 N A:GLU142 4.7 31.7 1.0 N A:SER146 4.8 31.3 1.0 C A:LEU148 4.8 24.6 1.0 CA A:ASP145 4.8 39.0 1.0 CG A:LYS147 4.8 33.5 1.0 C A:ASP145 4.9 35.7 1.0 O A:HOH324 5.0 43.1 1.0

K.R.Park, J.Y.An, J.Y.Kang, J.G.Lee, Y.Lee, S.A.Mun, C.D.Jun, W.K.Song, S.H.Eom. Structural Mechanism Underlying Regulation of Human EFHD2/Swiprosin-1 Actin-Bundling Activity By SER183 Phosphorylation. Biochem. Biophys. Res. V. 483 442 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 28011271
DOI: 10.1016/J.BBRC.2016.12.124