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Calcium in PDB 5hfs: Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System

Enzymatic activity of Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System

All present enzymatic activity of Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System:
3.4.22.37;

Protein crystallography data

The structure of Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System, PDB code: 5hfs was solved by P.Golik, B.Szmigielski, M.Ksiazek, Z.Nowakowska, D.Mizgalska, M.Nowak, G.Dubin, J.Potempa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.64 / 1.97
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 37.690, 37.690, 184.150, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 24.7

Other elements in 5hfs:

The structure of Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System (pdb code 5hfs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System, PDB code: 5hfs:

Calcium binding site 1 out of 1 in 5hfs

Go back to Calcium Binding Sites List in 5hfs
Calcium binding site 1 out of 1 in the Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of C-Terminal Domain of Cargo Proteins of Type IX Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca801

b:84.6
occ:1.00
NH1 A:ARG721 3.2 65.9 1.0
CZ A:ARG721 4.2 69.9 1.0
NH2 A:ARG721 4.4 80.1 1.0
CD A:ARG701 4.7 50.8 1.0
CZ A:PHE695 4.8 32.6 1.0
NE A:ARG701 4.9 62.5 1.0

Reference:

I.De Diego, M.Ksiazek, D.Mizgalska, L.Koneru, P.Golik, B.Szmigielski, M.Nowak, Z.Nowakowska, B.Potempa, J.A.Houston, J.J.Enghild, I.B.Thgersen, J.Gao, A.H.Kwan, J.Trewhella, G.Dubin, F.X.Gomis-Ruth, K.A.Nguyen, J.Potempa. The Outer-Membrane Export Signal of Porphyromonas Gingivalis Type IX Secretion System (T9SS) Is A Conserved C-Terminal Beta-Sandwich Domain. Sci Rep V. 6 23123 2016.
ISSN: ESSN 2045-2322
PubMed: 27005013
DOI: 10.1038/SREP23123
Page generated: Sun Jul 14 20:00:19 2024

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