Calcium in PDB 5hha: Structure of Pvdo From Pseudomonas Aeruginosa

The structure of Structure of Pvdo From Pseudomonas Aeruginosa, PDB code: 5hha was solved by G.Bai, Z.Yuan, G.Shang, H.Xia, L.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.13 / 1.24
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.978, 78.924, 58.205, 90.00, 93.89, 90.00
R / Rfree (%)	15.1 / 16.5

The binding sites of Calcium atom in the Structure of Pvdo From Pseudomonas Aeruginosa (pdb code 5hha). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Pvdo From Pseudomonas Aeruginosa, PDB code: 5hha:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Pvdo From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Pvdo From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:8.3 occ:1.00 O A:THR185 2.3 9.0 1.0 O A:TYR192 2.4 9.5 1.0 O A:HOH441 2.4 10.6 1.0 OD1 A:ASN184 2.4 9.4 1.0 O A:GLY187 2.4 10.2 1.0 OD1 A:ASP190 2.4 9.3 1.0 OD2 A:ASP190 2.5 8.8 1.0 CG A:ASP190 2.8 9.5 1.0 H A:THR185 3.5 9.5 1.0 C A:GLY187 3.5 9.2 1.0 C A:TYR192 3.5 9.6 1.0 C A:THR185 3.6 8.5 1.0 H A:TYR192 3.6 11.2 1.0 CG A:ASN184 3.6 8.8 1.0 HB2 A:TYR192 3.6 11.2 1.0 N A:THR185 3.8 7.8 1.0 N A:GLY187 3.9 8.5 1.0 HA A:ASN184 3.9 10.1 1.0 H A:GLY187 3.9 10.1 1.0 C A:TYR186 4.1 7.7 1.0 HA A:ALA188 4.1 12.5 1.0 H A:ASP190 4.1 12.0 1.0 HA A:ASN193 4.2 12.7 1.0 HD21 A:ASN184 4.2 11.8 1.0 N A:TYR192 4.3 9.5 1.0 CA A:TYR192 4.3 9.5 1.0 CA A:GLY187 4.3 10.3 1.0 CB A:ASP190 4.3 10.4 1.0 CA A:THR185 4.3 7.5 1.0 C A:ASN184 4.3 8.0 1.0 O A:HOH423 4.4 25.2 1.0 ND2 A:ASN184 4.4 10.1 1.0 CB A:TYR192 4.4 9.3 1.0 O A:TYR186 4.4 8.7 1.0 O A:TRP252 4.5 9.0 1.0 CA A:ASN184 4.5 8.4 1.0 N A:TYR186 4.5 7.8 1.0 HA A:TYR186 4.5 11.2 1.0 N A:ALA188 4.5 9.9 1.0 N A:ASN193 4.5 8.6 1.0 CB A:ASN184 4.6 9.1 1.0 CA A:TYR186 4.6 9.3 1.0 HA A:TRP252 4.6 9.6 1.0 O A:ASN193 4.7 11.6 1.0 CA A:ASN193 4.7 10.6 1.0 HB2 A:TRP252 4.7 10.8 1.0 HB3 A:ASP190 4.7 12.4 1.0 HB2 A:ASP190 4.7 12.4 1.0 O A:PHE194 4.7 9.6 1.0 HD1 A:TYR192 4.7 10.4 1.0 CA A:ALA188 4.7 10.4 1.0 HA A:THR185 4.7 9.3 1.0 C A:ASN193 4.8 10.2 1.0 HA2 A:GLY187 4.9 12.0 1.0 N A:ASP190 4.9 10.2 1.0 HB3 A:TYR192 4.9 11.2 1.0 O A:HOH635 4.9 14.6 1.0 HA3 A:GLY187 5.0 12.0 1.0

Calcium binding site 2 out of 2 in the Structure of Pvdo From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Pvdo From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:8.8 occ:1.00 O B:GLY187 2.3 10.5 1.0 O B:HOH424 2.3 10.5 1.0 O B:THR185 2.3 9.4 1.0 OD1 B:ASN184 2.4 10.0 1.0 O B:TYR192 2.4 9.8 1.0 OD1 B:ASP190 2.5 11.1 1.0 OD2 B:ASP190 2.5 9.6 1.0 CG B:ASP190 2.8 10.0 1.0 H B:THR185 3.5 9.0 1.0 C B:GLY187 3.5 11.1 1.0 C B:TYR192 3.6 10.6 1.0 C B:THR185 3.6 8.8 1.0 CG B:ASN184 3.6 8.7 1.0 H B:TYR192 3.7 11.8 1.0 HB2 B:TYR192 3.7 13.0 1.0 HA B:ALA188 3.8 11.7 1.0 N B:THR185 3.8 7.8 1.0 HA B:ASN184 3.9 10.0 1.0 N B:GLY187 4.0 9.6 1.0 H B:GLY187 4.1 11.3 1.0 O B:HOH429 4.1 16.9 1.0 C B:TYR186 4.2 9.6 1.0 H B:ASP190 4.2 12.9 1.0 HD21 B:ASN184 4.2 11.7 1.0 CA B:TYR192 4.3 10.1 1.0 CB B:ASP190 4.3 11.2 1.0 CA B:THR185 4.3 7.9 1.0 N B:TYR192 4.3 10.4 1.0 C B:ASN184 4.3 7.7 1.0 CA B:GLY187 4.4 12.0 1.0 ND2 B:ASN184 4.4 10.3 1.0 HA B:ASN193 4.4 12.0 1.0 CB B:TYR192 4.4 11.3 1.0 O B:TRP252 4.4 10.0 1.0 HA B:TRP252 4.4 9.9 1.0 O B:TYR186 4.4 9.5 1.0 CA B:ASN184 4.5 8.5 1.0 N B:ALA188 4.5 11.7 1.0 HB2 B:TRP252 4.5 10.3 1.0 CA B:ALA188 4.5 10.3 1.0 N B:TYR186 4.6 9.1 1.0 N B:ASN193 4.6 10.5 1.0 HB3 B:TYR192 4.6 13.0 1.0 CB B:ASN184 4.6 8.9 1.0 HA B:TYR186 4.6 10.3 1.0 O B:ASN193 4.7 11.5 1.0 HB3 B:ASP190 4.7 13.2 1.0 CA B:TYR186 4.7 8.9 1.0 HB2 B:ASP190 4.7 13.2 1.0 HA B:THR185 4.7 9.3 1.0 O B:PHE194 4.8 10.3 1.0 CA B:ASN193 4.8 10.9 1.0 C B:ASN193 4.8 11.3 1.0 HA2 B:GLY187 4.9 14.0 1.0 N B:ASP190 4.9 11.2 1.0

Z.Yuan, G.Shang, G.Bai, H.Xia, L.Gu. Crystal Structure of Chromophore Maturation Protein From Pseudomonas Aeruginosa To Be Published.