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Calcium in PDB 5hun: The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus

Enzymatic activity of The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus

All present enzymatic activity of The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus:
3.2.1.18;

Protein crystallography data

The structure of The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus, PDB code: 5hun was solved by H.Yang, P.J.Carney, Z.Guo, J.C.Chang, J.Stevens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 90.652, 90.652, 110.809, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 23.7

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus (pdb code 5hun). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus, PDB code: 5hun:

Calcium binding site 1 out of 1 in 5hun

Go back to Calcium Binding Sites List in 5hun
Calcium binding site 1 out of 1 in the The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Neuraminidase From A/Gyrfalcon/Washington/41088-6/2014 Influenza Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:40.7
occ:1.00
 O A:ASP292 2.2 36.5 1.0
O A:TYR344 2.3 34.0 1.0
OD2 A:ASP322 2.4 41.4 1.0
O A:HOH666 2.4 31.0 1.0
O A:GLY296 2.4 43.7 1.0
C A:ASP292 3.4 36.6 1.0
CG A:ASP322 3.5 42.9 1.0
C A:TYR344 3.5 37.0 1.0
C A:GLY296 3.5 42.8 1.0
O A:GLY343 3.8 41.6 1.0
CA A:GLY345 3.9 34.9 1.0
N A:GLY345 4.1 35.8 1.0
O A:GLN342 4.1 43.8 1.0
C A:GLY343 4.2 44.3 1.0
O A:HOH640 4.2 25.0 1.0
CA A:ASN293 4.2 36.4 1.0
N A:ASN293 4.2 35.0 1.0
CB A:ASP322 4.3 40.5 1.0
OD1 A:ASP322 4.3 43.5 1.0
N A:THR297 4.3 41.6 1.0
OD1 A:ASP292 4.4 35.4 1.0
CA A:THR297 4.4 40.1 1.0
CA A:ASP292 4.4 36.1 1.0
N A:GLY296 4.4 43.8 1.0
CB A:ASP292 4.5 35.3 1.0
CA A:GLY296 4.5 45.1 1.0
N A:TYR344 4.6 41.1 1.0
CA A:TYR344 4.6 40.9 1.0
C A:ASN293 4.7 39.3 1.0
N A:ASP292 4.8 35.8 1.0
CA A:GLY343 4.9 43.4 1.0
CG A:ASP292 4.9 36.1 1.0
N A:TRP294 4.9 41.9 1.0

Reference:

H.Yang, P.J.Carney, V.P.Mishin, Z.Guo, J.C.Chang, D.E.Wentworth, L.V.Gubareva, J.Stevens. Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase From Recent H5NX Avian Influenza Viruses. J.Virol. V. 90 5770 2016.
ISSN: ESSN 1098-5514
PubMed: 27053557
DOI: 10.1128/JVI.00180-16
Page generated: Sun Jul 14 20:13:52 2024

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