Calcium in PDB 5hzl: Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes

The structure of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes, PDB code: 5hzl was solved by S.H.Light, G.Minasov, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.84 / 2.75
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	120.350, 120.350, 62.286, 90.00, 90.00, 120.00
R / Rfree (%)	19.2 / 22.6

The binding sites of Calcium atom in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes (pdb code 5hzl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes, PDB code: 5hzl:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:44.9 occ:1.00 OE2 B:GLU31 2.4 51.9 1.0 OE2 B:GLU27 2.6 42.5 1.0 OE1 B:GLU31 2.6 51.2 1.0 CD B:GLU31 2.9 48.8 1.0 CD B:GLU27 3.6 40.3 1.0 CG B:GLU27 4.0 37.3 1.0 CG B:GLU31 4.4 44.0 1.0 OE1 B:GLU27 4.7 40.3 1.0

Calcium binding site 2 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:44.6 occ:1.00 OD1 B:ASP40 2.4 42.8 1.0 O B:HOH515 2.4 43.7 1.0 OD2 B:ASP44 2.5 41.0 1.0 OD1 B:ASP44 2.5 40.1 1.0 CG B:ASP44 2.8 40.2 1.0 CG B:ASP40 3.5 43.5 1.0 OD2 B:ASP40 4.0 46.1 1.0 CB B:ASP44 4.2 39.9 1.0 N B:ASP40 4.6 42.3 1.0 O B:HOH532 4.7 47.0 1.0 N B:SER41 4.7 38.0 1.0 CB B:SER41 4.7 38.8 1.0 CB B:ASP40 4.8 42.2 1.0 CA B:ASP40 5.0 41.3 1.0

Calcium binding site 3 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:79.8 occ:1.00 OE1 B:GLU163 2.5 71.9 1.0 OE2 B:GLU187 2.6 71.9 1.0 CD B:GLU163 3.3 71.9 1.0 CD B:GLU187 3.4 69.1 1.0 OE2 B:GLU163 3.4 75.8 1.0 OE1 B:GLU187 3.6 70.1 1.0 OD2 B:ASP230 3.6 67.8 1.0 OH B:TYR261 4.3 54.2 1.0 CG B:GLU163 4.7 66.9 1.0 CG B:GLU187 4.8 65.7 1.0 CG B:ASP230 4.8 67.2 1.0

Calcium binding site 4 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:54.6 occ:1.00 OE2 B:GLU153 2.7 42.2 1.0 OE1 B:GLU153 2.8 45.5 1.0 CD B:GLU153 3.1 41.6 1.0 CG B:GLU153 4.7 40.6 1.0 ND2 B:ASN178 4.9 37.8 1.0

Calcium binding site 5 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca405 b:64.1 occ:1.00 O B:GLN194 2.4 65.8 1.0 OD1 B:ASP173 2.6 63.0 1.0 C B:GLN194 3.5 65.1 1.0 CG B:ASP173 3.7 58.7 1.0 CA B:GLN194 4.1 67.3 1.0 CB B:ASP173 4.5 56.3 1.0 OD2 B:ASP173 4.6 57.8 1.0 N B:LEU195 4.7 61.8 1.0 CB B:GLN194 4.7 66.9 1.0 N B:GLY196 4.7 62.4 1.0 CA B:ASP173 4.9 54.7 1.0 O B:GLN193 4.9 68.7 1.0

Calcium binding site 6 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca406 b:83.0 occ:1.00 OD1 B:ASP258 2.9 75.0 1.0 OD2 B:ASP258 3.3 78.6 1.0 CG B:ASP258 3.5 76.8 1.0 O B:HOH513 4.5 45.1 1.0

Calcium binding site 7 out of 7 in the Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca407 b:85.0 occ:1.00 O B:GLY35 2.8 46.9 1.0 OD1 B:ASP38 3.0 73.8 1.0 O B:HOH524 3.2 56.3 1.0 O B:HOH527 3.5 49.5 1.0 C B:GLY35 3.8 44.5 1.0 CG B:ASP38 3.9 70.6 1.0 CA B:ASP38 4.0 56.4 1.0 CA B:GLY35 4.1 42.5 1.0 CB B:ASP38 4.1 63.8 1.0 N B:ASP38 4.6 51.2 1.0

S.H.Light, G.Minasov, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Secreted Internalin-Like Protein LMO2445 From Listeria Monocytogenes To Be Published.