Calcium in PDB 5i2m: Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation

The structure of Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation, PDB code: 5i2m was solved by S.Roche, S.Bressanelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.96 / 2.40
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	71.270, 224.200, 375.740, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 21.5

The binding sites of Calcium atom in the Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation (pdb code 5i2m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation, PDB code: 5i2m:

Calcium binding site 1 out of 1 in the Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Vsv-Indiana (Mudd-Summers Strain) Glycoprotein Under Its Acidic Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca502 b:49.9 occ:1.00 OE1 C:GLU194 2.5 65.3 1.0 OD2 C:ASP192 2.5 41.9 1.0 CD C:GLU194 3.3 51.4 1.0 OE2 C:GLU194 3.3 51.0 1.0 CG C:ASP192 3.6 48.6 1.0 O C:HOH631 4.0 44.8 1.0 CB C:ASP192 4.2 50.3 1.0 O C:HOH665 4.4 39.8 1.0 OD1 C:ASP192 4.7 56.8 1.0 CG C:GLU194 4.7 51.1 1.0 OE1 C:GLU191 4.8 43.0 1.0

S.Roche, S.Bressanelli, F.A.Rey, Y.Gaudin. Crystal Structure of the Low-pH Form of the Vesicular Stomatitis Virus Glycoprotein G. Science V. 313 187 2006.
ISSN: ESSN 1095-9203
PubMed: 16840692
DOI: 10.1126/SCIENCE.1127683