Atomistry » Calcium » PDB 5i6y-5ik7 » 5ihj
Atomistry »
  Calcium »
    PDB 5i6y-5ik7 »
      5ihj »

Calcium in PDB 5ihj: Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57

Protein crystallography data

The structure of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57, PDB code: 5ihj was solved by K.H.Piepenbrink, E.J.Sundberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.93 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.070, 56.636, 49.997, 90.00, 91.60, 90.00
R / Rfree (%) 21.1 / 24.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 (pdb code 5ihj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57, PDB code: 5ihj:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 1 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1206

b:95.3
occ:1.00
OG A:SER337 2.8 36.4 1.0
OE2 A:GLU45 3.5 74.3 1.0
CB A:SER337 3.6 22.9 1.0
NH2 A:ARG66 3.8 24.8 1.0
CE2 A:TYR341 3.8 32.7 1.0
CB A:TYR1027 4.0 26.3 1.0
CD2 A:TYR341 4.4 31.4 1.0
CD1 A:TYR1027 4.4 33.5 1.0
CD A:GLU45 4.5 66.9 1.0
CG A:TYR1027 4.6 35.0 1.0
CZ A:ARG66 4.7 28.9 1.0
NH1 A:ARG66 4.7 30.9 1.0
OE1 A:GLU45 4.7 65.1 1.0
O A:ALA1023 4.8 20.6 1.0
CZ A:TYR341 4.8 34.1 1.0
N A:ALA338 4.8 17.7 1.0
C A:SER337 4.9 19.9 1.0
CA A:SER337 4.9 22.6 1.0
OH A:TYR341 5.0 30.6 1.0
CA A:TYR1027 5.0 21.7 1.0
O A:HOH1362 5.0 45.1 1.0

Calcium binding site 2 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 2 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1207

b:77.7
occ:1.00
OG1 A:THR345 3.3 12.9 1.0
O A:TYR341 4.2 21.4 1.0
CB A:THR345 4.3 15.4 1.0
CB A:ASN367 4.4 18.1 1.0
CG A:ASN367 4.7 23.0 1.0
C A:TYR341 4.7 17.0 1.0
CG2 A:THR345 4.7 14.4 1.0
O A:ASN367 4.8 15.7 1.0
CB A:TYR341 4.8 24.2 1.0
OD1 A:ASN367 4.9 26.8 1.0

Calcium binding site 3 out of 3 in 5ihj

Go back to Calcium Binding Sites List in 5ihj
Calcium binding site 3 out of 3 in the Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii BIDMC57 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1208

b:71.5
occ:1.00
O A:HOH1368 2.2 41.9 1.0
OD1 A:ASP120 2.3 25.5 1.0
O A:HOH1364 2.3 49.2 1.0
CG A:ASP120 3.4 28.9 1.0
OD2 A:ASP120 3.9 33.9 1.0
CB A:ASP120 4.7 24.6 1.0

Reference:

K.H.Piepenbrink, E.Lillehoj, C.M.Harding, J.W.Labonte, X.Zuo, C.A.Rapp, R.S.Munson, S.E.Goldblum, M.F.Feldman, J.J.Gray, E.J.Sundberg. Structural Diversity in the Type IV Pili of Multidrug-Resistant Acinetobacter. J.Biol.Chem. V. 291 22924 2016.
ISSN: ESSN 1083-351X
PubMed: 27634041
DOI: 10.1074/JBC.M116.751099
Page generated: Sun Jul 14 20:32:38 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy