Calcium in PDB 5iry: Crystal Structure of Human Desmocollin-1 Ectodomain

The structure of Crystal Structure of Human Desmocollin-1 Ectodomain, PDB code: 5iry was solved by J.Brasch, O.J.Harrison, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.99 / 3.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	213.806, 66.174, 141.633, 90.00, 127.15, 90.00
R / Rfree (%)	24.9 / 30.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Human Desmocollin-1 Ectodomain (pdb code 5iry). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 24 binding sites of Calcium where determined in the Crystal Structure of Human Desmocollin-1 Ectodomain, PDB code: 5iry:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca605 b:0.4 occ:1.00 OD1 A:ASP67 2.2 0.3 1.0 OE1 A:GLU69 2.3 0.8 1.0 OD2 A:ASP103 2.3 0.7 1.0 OE1 A:GLU11 2.5 0.8 1.0 CG A:ASP67 2.5 0.5 1.0 OD2 A:ASP67 2.8 0.9 1.0 HA A:ASP67 3.0 0.8 1.0 H A:ARG68 3.4 0.4 1.0 HD21 A:ASN12 3.4 0.1 1.0 H A:GLU69 3.4 0.5 1.0 CG A:ASP103 3.5 0.3 1.0 CD A:GLU69 3.5 0.9 1.0 CB A:ASP67 3.5 0.0 1.0 CD A:GLU11 3.6 0.5 1.0 CA A:ASP67 3.6 0.2 1.0 N A:ARG68 3.8 0.7 1.0 HB2 A:GLU69 3.8 0.8 1.0 HB2 A:ASP67 3.9 0.0 1.0 C A:ASP67 4.0 0.6 1.0 OD1 A:ASP103 4.0 0.1 1.0 OD1 A:ASN12 4.1 0.2 1.0 HD21 A:ASN104 4.1 0.5 1.0 ND2 A:ASN12 4.1 0.1 1.0 OE2 A:GLU11 4.1 0.1 1.0 OE2 A:GLU69 4.2 0.4 1.0 HB2 A:GLU11 4.2 0.8 1.0 N A:GLU69 4.2 0.3 1.0 HB3 A:ASP67 4.3 0.0 1.0 HB3 A:ARG68 4.4 0.2 1.0 CG A:ASN12 4.5 0.8 1.0 CB A:GLU69 4.6 0.3 1.0 CG A:GLU69 4.6 0.8 1.0 HB2 A:ASP103 4.7 0.3 1.0 CB A:ASP103 4.7 0.3 1.0 CG A:GLU11 4.7 0.3 1.0 HD22 A:ASN12 4.8 0.1 1.0 ND2 A:ASN104 4.8 0.8 1.0 CA A:ARG68 4.8 1.0 1.0 O A:ASP67 4.9 0.1 1.0 HB3 A:ASP103 4.9 0.3 1.0 HG3 A:GLU11 4.9 1.0 1.0 CB A:GLU11 4.9 0.1 1.0 HD22 A:ASN104 4.9 0.5 1.0 N A:ASP67 5.0 0.8 1.0 CA A:CA614 5.0 0.1 1.0

Calcium binding site 2 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca606 b:0.3 occ:1.00 HD21 A:ASN102 1.7 0.6 1.0 ND2 A:ASN102 2.3 0.3 1.0 HD22 A:ASN102 2.3 0.6 1.0 OD2 A:ASP136 2.3 0.8 1.0 OD2 A:ASP192 2.4 0.0 1.0 O A:ASN104 2.4 0.8 1.0 OD2 A:ASP134 2.4 0.7 1.0 O A:HIS142 2.6 0.5 1.0 OD1 A:ASP134 2.8 0.1 1.0 CG A:ASP134 3.0 0.9 1.0 CG A:ASP192 3.4 0.1 1.0 CG A:ASP136 3.4 0.4 1.0 HB2 A:ASP136 3.4 0.9 1.0 HB2 A:ASP192 3.5 0.1 1.0 HB3 A:ASP192 3.5 0.1 1.0 CG A:ASN102 3.5 0.1 1.0 C A:ASN104 3.6 0.2 1.0 HD3 A:PRO106 3.7 0.8 1.0 CB A:ASP192 3.7 0.6 1.0 C A:HIS142 3.8 0.9 1.0 H A:ASN104 3.8 0.9 1.0 CB A:ASP136 4.0 0.9 1.0 HD12 A:LEU200 4.0 0.3 1.0 HA A:ALA105 4.0 0.8 1.0 HA A:THR143 4.1 1.0 1.0 OD1 A:ASN102 4.1 0.1 1.0 HA A:ASN102 4.1 0.8 1.0 HB2 A:ASN104 4.1 0.7 1.0 HB3 A:HIS142 4.2 0.2 1.0 HB2 A:LEU200 4.3 0.6 1.0 HA A:HIS142 4.3 0.4 1.0 HB3 A:ASP136 4.4 0.9 1.0 H A:ASP136 4.4 0.5 1.0 CA A:ASN104 4.5 0.1 1.0 OD1 A:ASP136 4.5 0.5 1.0 CB A:ASP134 4.5 0.2 1.0 N A:ASN104 4.5 0.9 1.0 OD1 A:ASP192 4.5 0.3 1.0 CD A:PRO106 4.6 0.7 1.0 CA A:HIS142 4.6 1.0 1.0 N A:ALA105 4.6 0.6 1.0 CA A:ALA105 4.7 0.7 1.0 CB A:ASN104 4.7 0.9 1.0 CB A:ASN102 4.7 0.1 1.0 HB2 A:ASP134 4.7 0.6 1.0 CA A:ASN102 4.7 0.2 1.0 N A:THR143 4.8 0.3 1.0 HB3 A:ASN104 4.8 0.7 1.0 HB3 A:ASP134 4.8 0.6 1.0 N A:PRO106 4.8 0.4 1.0 CA A:THR143 4.9 0.1 1.0 HD21 A:LEU145 4.9 0.3 1.0 CB A:HIS142 4.9 0.4 1.0 CD1 A:LEU200 4.9 0.4 1.0 C A:ALA105 4.9 0.4 1.0

Calcium binding site 3 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca607 b:0.8 occ:1.00 OD1 A:ASN214 2.3 0.8 1.0 OD1 A:ASP245 2.3 0.9 1.0 O A:HIS253 2.4 0.0 1.0 O A:ASN216 2.4 0.4 1.0 OD2 A:ASP245 2.5 0.8 1.0 OD2 A:ASP247 2.5 0.5 1.0 OD1 A:ASN304 2.5 0.8 1.0 CG A:ASP245 2.7 0.3 1.0 HB2 A:ASP247 3.0 0.3 1.0 CG A:ASN214 3.3 0.6 1.0 HD21 A:ASN214 3.5 0.5 1.0 CG A:ASN304 3.5 0.9 1.0 CG A:ASP247 3.5 0.5 1.0 C A:HIS253 3.6 0.8 1.0 C A:ASN216 3.6 0.5 1.0 CB A:ASP247 3.7 0.1 1.0 HD21 A:ASN304 3.7 0.8 1.0 ND2 A:ASN214 3.8 0.2 1.0 HB2 A:ASN216 3.8 0.1 1.0 H A:ASN216 3.9 0.7 1.0 HB3 A:HIS253 3.9 0.1 1.0 ND2 A:ASN304 4.0 0.9 1.0 HA A:PRO217 4.0 0.2 1.0 H A:ASP247 4.1 0.8 1.0 HA A:SER254 4.1 0.9 1.0 HA A:ASN214 4.1 0.4 1.0 HD3 A:PRO218 4.1 0.2 1.0 HA A:HIS253 4.1 0.7 1.0 HE1 A:PHE308 4.2 0.9 1.0 CB A:ASP245 4.2 0.1 1.0 HB3 A:ASP247 4.3 0.3 1.0 CA A:HIS253 4.3 0.9 1.0 CA A:ASN216 4.4 0.6 1.0 HB3 A:ASP245 4.5 0.3 1.0 CB A:ASN216 4.5 0.6 1.0 N A:ASN216 4.5 0.6 1.0 CA A:PRO217 4.6 0.3 1.0 N A:PRO217 4.6 0.6 1.0 CB A:HIS253 4.6 0.5 1.0 N A:SER254 4.6 0.6 1.0 CB A:ASN214 4.6 0.5 1.0 HD22 A:ASN214 4.6 0.5 1.0 OD1 A:ASP247 4.6 0.5 1.0 CB A:ASN304 4.6 0.0 1.0 C A:PRO217 4.7 0.2 1.0 N A:ASP247 4.7 0.1 1.0 HB2 A:ASN304 4.7 0.8 1.0 HB2 A:ASP245 4.7 0.3 1.0 HB3 A:ASN304 4.8 0.8 1.0 CA A:ASN214 4.8 0.8 1.0 CA A:SER254 4.8 0.2 1.0 HD22 A:ASN304 4.8 0.8 1.0 N A:PRO218 4.8 0.3 1.0 HA A:ASP245 4.8 0.3 1.0 HB3 A:ASN216 4.9 0.1 1.0 CA A:ASP247 4.9 0.5 1.0 H A:GLN246 4.9 1.0 1.0 CD A:PRO218 4.9 0.5 1.0 CE1 A:PHE308 4.9 0.7 1.0 HB2 A:HIS253 4.9 0.1 1.0 HB3 A:PRO218 5.0 0.4 1.0 HD1 A:PHE308 5.0 0.3 1.0

Calcium binding site 4 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca608 b:0.9 occ:1.00 OD1 A:ASP330 2.1 0.5 1.0 O A:SER331 2.3 0.2 1.0 OE2 A:GLU291 2.5 0.7 1.0 OE2 A:GLU231 2.9 0.3 1.0 H A:SER331 3.2 0.1 1.0 C A:SER331 3.2 0.1 1.0 CG A:ASP330 3.2 0.1 1.0 HA A:ASP332 3.3 0.2 1.0 HG3 A:GLU365 3.4 0.0 1.0 H A:GLU333 3.6 1.0 1.0 OD2 A:ASP330 3.7 0.8 1.0 N A:SER331 3.7 0.9 1.0 CD A:GLU291 3.7 0.2 1.0 HG3 A:GLU333 3.8 0.1 1.0 CA A:CA612 3.9 0.6 1.0 HB3 A:TYR290 3.9 0.5 1.0 N A:ASP332 4.0 0.7 1.0 CA A:ASP332 4.1 0.9 1.0 OE2 A:GLU365 4.1 0.9 1.0 CD A:GLU231 4.1 0.6 1.0 CA A:SER331 4.1 1.0 1.0 HA A:ASP330 4.2 0.1 1.0 CG A:GLU365 4.3 0.2 1.0 N A:GLU333 4.3 0.3 1.0 OE1 A:GLU291 4.5 0.5 1.0 CB A:ASP330 4.5 0.0 1.0 C A:ASP330 4.5 0.5 1.0 HG3 A:GLU291 4.5 0.6 1.0 HB3 A:SER331 4.6 0.1 1.0 HG2 A:GLU365 4.6 0.0 1.0 CG A:GLU333 4.6 0.2 1.0 CD A:GLU365 4.6 0.9 1.0 CA A:ASP330 4.6 0.4 1.0 CD A:GLU333 4.7 0.8 1.0 HD2 A:TYR290 4.7 0.3 1.0 HB2 A:PRO364 4.7 0.3 1.0 C A:ASP332 4.7 0.1 1.0 OE1 A:GLU231 4.7 0.1 1.0 CG A:GLU291 4.7 0.5 1.0 HA A:GLU365 4.8 0.7 1.0 H A:ASP332 4.8 0.7 1.0 CB A:TYR290 4.8 0.7 1.0 HB2 A:GLU333 4.8 0.4 1.0 HA A:SER331 4.8 0.6 1.0 OE1 A:GLU333 4.9 0.6 1.0 HG2 A:PRO364 4.9 0.0 1.0 HB3 A:ASP330 4.9 0.8 1.0 HG2 A:GLU231 4.9 0.4 1.0 CB A:SER331 5.0 0.2 1.0 CD2 A:TYR290 5.0 0.2 1.0

Calcium binding site 5 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca609 b:0.4 occ:1.00 OE1 A:GLU402 2.3 0.8 1.0 OD2 A:ASP438 2.3 0.9 1.0 OD1 A:ASP400 2.4 0.8 1.0 OD1 A:ASP348 2.5 1.0 1.0 OE2 A:GLU402 2.5 0.1 1.0 CD A:GLU402 2.7 0.1 1.0 CG A:ASP348 3.1 0.8 1.0 CG A:ASP438 3.2 0.0 1.0 HB2 A:ASP348 3.2 0.3 1.0 CG A:ASP400 3.3 0.1 1.0 H A:ARG401 3.3 0.7 1.0 HA A:ASP400 3.4 0.4 1.0 OD1 A:ASP438 3.5 0.2 1.0 H A:GLU402 3.5 1.0 1.0 CB A:ASP348 3.7 0.3 1.0 N A:ARG401 3.9 0.1 1.0 OD2 A:ASP400 3.9 0.9 1.0 OD2 A:ASP348 4.0 0.5 1.0 HB3 A:ARG401 4.0 0.8 1.0 CA A:CA610 4.0 0.7 1.0 CA A:ASP400 4.1 0.3 1.0 HE1 A:HIS439 4.1 0.6 1.0 CG A:GLU402 4.2 0.4 1.0 CB A:ASP400 4.2 0.9 1.0 O A:ASP348 4.3 0.6 1.0 N A:GLU402 4.3 1.0 1.0 HB3 A:ASP348 4.4 0.3 1.0 HB2 A:GLU402 4.4 0.2 1.0 C A:ASP400 4.4 0.7 1.0 CB A:ASP438 4.5 0.1 1.0 C A:ASP348 4.5 0.4 1.0 HB2 A:ASP400 4.5 0.7 1.0 HE A:ARG401 4.5 0.5 1.0 HG3 A:GLU402 4.6 0.1 1.0 HB3 A:ASP438 4.6 0.5 1.0 HB2 A:ASP438 4.7 0.5 1.0 HH21 A:ARG401 4.7 0.1 1.0 HG2 A:GLU402 4.7 0.1 1.0 CA A:ASP348 4.7 0.3 1.0 CB A:ARG401 4.7 0.5 1.0 CB A:GLU402 4.8 0.5 1.0 CA A:ARG401 4.8 0.1 1.0 CE1 A:HIS439 4.8 0.0 1.0 HB3 A:TYR436 4.8 0.8 1.0 H A:TYR436 4.9 0.7 1.0 HB2 A:ARG401 4.9 0.8 1.0 O A:TYR436 5.0 0.3 1.0 HA2 A:GLY349 5.0 0.0 1.0

Calcium binding site 6 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca610 b:0.7 occ:1.00 HH21 A:ARG401 1.6 0.1 1.0 OD2 A:ASP435 2.2 0.8 1.0 NH2 A:ARG401 2.3 0.5 1.0 OE2 A:GLU402 2.3 0.1 1.0 O A:TYR436 2.5 0.3 1.0 HH22 A:ARG401 2.5 0.1 1.0 OD1 A:ASP438 2.6 0.2 1.0 OD1 A:ASP465 2.8 0.5 1.0 OD1 A:ASP348 3.1 1.0 1.0 HA A:ASP465 3.1 0.9 1.0 H A:TYR436 3.2 0.7 1.0 CG A:ASP435 3.3 0.5 1.0 CD A:GLU402 3.3 0.1 1.0 HE A:ARG401 3.3 0.5 1.0 CZ A:ARG401 3.4 0.7 1.0 H A:ASP438 3.6 0.7 1.0 C A:TYR436 3.7 0.7 1.0 NE A:ARG401 3.7 0.9 1.0 OD1 A:ASP435 3.8 0.2 1.0 CG A:ASP438 3.8 0.0 1.0 CG A:ASP465 3.8 0.4 1.0 N A:TYR436 3.9 0.3 1.0 HG3 A:GLU402 3.9 0.1 1.0 CA A:ASP465 4.0 0.8 1.0 CA A:CA609 4.0 0.4 1.0 HB3 A:ASP465 4.0 0.5 1.0 H A:GLY466 4.0 0.2 1.0 CG A:GLU402 4.1 0.4 1.0 HG2 A:GLU402 4.1 0.1 1.0 OE1 A:GLU402 4.1 0.8 1.0 CB A:ASP465 4.2 0.4 1.0 OD2 A:ASP438 4.2 0.9 1.0 HA A:ASP435 4.3 0.8 1.0 CG A:ASP348 4.3 0.8 1.0 HA A:ASN437 4.3 0.8 1.0 CA A:TYR436 4.4 0.7 1.0 HB3 A:ARG401 4.5 0.8 1.0 NH1 A:ARG401 4.5 0.3 1.0 N A:ASP438 4.5 0.2 1.0 CB A:ASP435 4.6 0.9 1.0 HH12 A:ARG401 4.6 0.9 1.0 N A:GLY466 4.6 0.5 1.0 N A:ASN437 4.7 0.4 1.0 HB3 A:TYR436 4.7 0.8 1.0 CA A:ASP435 4.8 0.0 1.0 C A:ASP465 4.8 0.8 1.0 C A:ASP435 4.8 0.3 1.0 H A:HIS439 4.8 0.0 1.0 HB2 A:ASP435 4.9 0.9 1.0 CA A:ASN437 4.9 0.0 1.0 OD2 A:ASP465 4.9 0.8 1.0 N A:ASP465 4.9 1.0 1.0 HB2 A:HIS439 5.0 0.5 1.0 ND1 A:HIS439 5.0 0.6 1.0 OD2 A:ASP348 5.0 0.5 1.0

Calcium binding site 7 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca611 b:0.8 occ:1.00 OD2 A:ASP463 2.2 0.5 1.0 HB2 A:ASP516 2.2 0.5 1.0 OD2 A:ASP516 2.3 0.8 1.0 HB3 A:ASP516 2.4 0.5 1.0 CB A:ASP516 2.5 0.1 1.0 OD1 A:ASN437 2.7 0.2 1.0 CG A:ASP516 2.7 0.5 1.0 O A:ASN469 2.8 0.4 1.0 CG A:ASP463 2.9 0.9 1.0 OD2 A:ASP465 2.9 0.8 1.0 OD1 A:ASP463 3.0 0.1 1.0 O A:HIS439 3.1 0.2 1.0 HA2 A:GLY470 3.4 0.5 1.0 HA A:ALA440 3.6 0.5 1.0 HD21 A:ASN437 3.6 0.4 1.0 HB2 A:ASP465 3.6 0.5 1.0 CG A:ASN437 3.7 0.7 1.0 C A:ASN469 3.8 0.1 1.0 HD3 A:PRO441 3.9 0.3 1.0 CG A:ASP465 3.9 0.4 1.0 OD1 A:ASP516 4.0 0.4 1.0 ND2 A:ASN437 4.0 0.8 1.0 CA A:ASP516 4.1 0.4 1.0 C A:HIS439 4.1 0.0 1.0 HB2 A:LEU520 4.1 0.7 1.0 CB A:ASP465 4.2 0.4 1.0 CA A:GLY470 4.2 0.0 1.0 CB A:ASP463 4.2 0.1 1.0 HB3 A:ASN469 4.3 1.0 1.0 H A:ARG517 4.3 0.7 1.0 HA A:ASP516 4.3 0.5 1.0 HD2 A:HIS518 4.4 0.1 1.0 CA A:ALA440 4.4 0.4 1.0 N A:GLY470 4.4 0.9 1.0 HB2 A:ASP463 4.5 0.3 1.0 HB3 A:ASP463 4.5 0.3 1.0 HD22 A:LEU520 4.5 0.6 1.0 HB3 A:ASP465 4.5 0.5 1.0 O A:GLY470 4.5 0.0 1.0 N A:ALA440 4.7 0.1 1.0 CD A:PRO441 4.7 0.9 1.0 N A:ARG517 4.8 0.7 1.0 H A:ASP516 4.8 0.8 1.0 H A:HIS439 4.8 0.0 1.0 H A:HIS518 4.9 0.9 1.0 C A:GLY470 4.9 0.5 1.0 HD22 A:ASN437 4.9 0.4 1.0 C A:ASP516 4.9 0.9 1.0 C A:ALA440 4.9 0.4 1.0 HA A:ASN437 4.9 0.8 1.0 HA3 A:GLY470 4.9 0.5 1.0 HE1 A:PHE473 4.9 0.6 1.0 HD2 A:PRO441 5.0 0.3 1.0 CA A:ASN469 5.0 0.1 1.0 H A:ASP465 5.0 0.2 1.0 N A:ASP516 5.0 0.5 1.0 N A:PRO441 5.0 1.0 1.0

Calcium binding site 8 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca612 b:0.6 occ:1.00 HD21 A:ASN289 1.6 0.4 1.0 OE1 A:GLU291 2.2 0.5 1.0 ND2 A:ASN289 2.3 0.2 1.0 OE2 A:GLU333 2.3 0.9 1.0 OE1 A:GLU231 2.3 0.1 1.0 OE1 A:GLU333 2.4 0.6 1.0 CD A:GLU333 2.4 0.8 1.0 HD22 A:ASN289 2.5 0.4 1.0 OE2 A:GLU231 2.7 0.3 1.0 OE2 A:GLU291 2.8 0.7 1.0 CD A:GLU291 2.8 0.2 1.0 CD A:GLU231 2.8 0.6 1.0 CG A:ASN289 3.4 1.0 1.0 HG3 A:GLU333 3.6 0.1 1.0 CG A:GLU333 3.7 0.2 1.0 OD1 A:ASN289 3.8 0.8 1.0 CA A:CA608 3.9 0.9 1.0 H A:GLU291 4.0 0.9 1.0 H A:TYR290 4.1 0.2 1.0 HB2 A:PRO364 4.2 0.3 1.0 OD1 A:ASN232 4.2 0.3 1.0 HB3 A:TYR290 4.2 0.5 1.0 HA A:ASN289 4.2 0.6 1.0 HG2 A:GLU333 4.3 0.1 1.0 CG A:GLU291 4.3 0.5 1.0 CG A:GLU231 4.3 0.8 1.0 HB2 A:GLU333 4.3 0.4 1.0 HB2 A:GLU291 4.5 0.9 1.0 N A:TYR290 4.6 0.5 1.0 HG3 A:GLU231 4.6 0.4 1.0 O A:SER331 4.6 0.2 1.0 HG2 A:GLU291 4.6 0.6 1.0 CB A:GLU333 4.6 1.0 1.0 CB A:ASN289 4.7 0.0 1.0 HB2 A:GLU231 4.7 0.8 1.0 N A:GLU291 4.8 0.6 1.0 CA A:ASN289 4.8 0.5 1.0 HG2 A:GLU231 4.9 0.4 1.0 HG3 A:GLU291 4.9 0.6 1.0 HB3 A:PRO364 4.9 0.3 1.0 CB A:PRO364 4.9 0.1 1.0 CB A:GLU291 5.0 0.8 1.0 C A:ASN289 5.0 0.3 1.0

Calcium binding site 9 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca613 b:0.1 occ:1.00 OE2 A:GLU365 2.3 0.9 1.0 OD2 A:ASP332 2.4 1.0 1.0 O A:GLU333 2.5 0.1 1.0 OE1 A:GLU365 2.5 0.0 1.0 CD A:GLU365 2.5 0.9 1.0 OD1 A:ASP332 2.5 0.0 1.0 CG A:ASP332 2.6 1.0 1.0 C A:GLU333 3.6 0.5 1.0 H A:GLU333 3.7 1.0 1.0 HG2 A:GLU365 3.7 0.0 1.0 N A:GLU333 3.7 0.3 1.0 CG A:GLU365 3.7 0.2 1.0 C A:ASP332 3.9 0.1 1.0 HA A:ASP332 3.9 0.2 1.0 CB A:ASP332 3.9 0.5 1.0 HG2 A:PRO364 4.0 0.0 1.0 OD1 A:ASP363 4.0 0.8 1.0 HD2 A:PRO364 4.0 0.4 1.0 CA A:ASP332 4.2 0.9 1.0 CA A:GLU333 4.3 0.7 1.0 HB2 A:GLU365 4.3 0.5 1.0 HG3 A:GLU365 4.4 0.0 1.0 O A:ASP332 4.4 0.1 1.0 HB3 A:ASP332 4.4 0.4 1.0 HA2 A:GLY334 4.5 0.6 1.0 H A:GLU365 4.5 0.9 1.0 HB2 A:ASP332 4.5 0.4 1.0 CG A:PRO364 4.6 0.2 1.0 CB A:GLU365 4.7 0.7 1.0 N A:GLY334 4.7 0.0 1.0 HG3 A:PRO364 4.8 0.0 1.0 CD A:PRO364 4.8 0.6 1.0 OD2 A:ASP419 4.8 0.1 1.0 HB2 A:GLU333 4.9 0.4 1.0 HA A:GLU333 5.0 0.6 1.0 CA A:GLY334 5.0 0.0 1.0

Calcium binding site 10 out of 24 in the Crystal Structure of Human Desmocollin-1 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Human Desmocollin-1 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca614 b:0.1 occ:1.00 OD1 A:ASP103 2.2 0.1 1.0 OE2 A:GLU69 2.3 0.4 1.0 OD2 A:ASP100 2.3 0.8 1.0 O A:ASP101 2.3 0.1 1.0 OD1 A:ASP136 2.4 0.5 1.0 OE2 A:GLU11 2.5 0.1 1.0 H A:ASP103 2.9 0.7 1.0 CG A:ASP100 3.0 0.3 1.0 HD22 A:ASN104 3.1 0.5 1.0 CG A:ASP103 3.2 0.3 1.0 OD1 A:ASP100 3.3 0.5 1.0 HA A:ASP136 3.3 0.1 1.0 H A:ASP101 3.3 0.2 1.0 CG A:ASP136 3.4 0.4 1.0 CD A:GLU69 3.4 0.9 1.0 C A:ASP101 3.5 0.1 1.0 CD A:GLU11 3.6 0.5 1.0 N A:ASP103 3.7 0.1 1.0 HB3 A:ASP136 3.8 0.9 1.0 OE1 A:GLU69 3.9 0.8 1.0 N A:ASP101 3.9 0.7 1.0 ND2 A:ASN104 3.9 0.8 1.0 OD2 A:ASP103 3.9 0.7 1.0 CB A:ASP136 4.0 0.9 1.0 H A:GLU137 4.0 0.8 1.0 HD21 A:ASN104 4.0 0.5 1.0 CA A:ASP136 4.0 0.7 1.0 OD1 A:ASP101 4.1 0.3 1.0 OE1 A:GLU11 4.1 0.8 1.0 HA A:ASN102 4.2 0.8 1.0 CB A:ASP103 4.2 0.3 1.0 HA A:ASP100 4.2 0.8 1.0 HB3 A:ASP103 4.2 0.3 1.0 CB A:ASP100 4.3 0.7 1.0 HD2 A:ARG68 4.3 0.7 1.0 HB3 A:ARG68 4.3 0.2 1.0 OD2 A:ASP136 4.3 0.8 1.0 CA A:ASP101 4.3 0.6 1.0 CA A:ASP103 4.4 0.9 1.0 H A:ASN104 4.4 0.9 1.0 N A:ASN102 4.5 0.3 1.0 HB2 A:ASP100 4.5 0.7 1.0 CA A:ASP100 4.6 0.3 1.0 CA A:ASN102 4.6 0.2 1.0 N A:GLU137 4.6 0.8 1.0 C A:ASP100 4.6 0.9 1.0 HB2 A:ASN104 4.7 0.7 1.0 CG A:GLU69 4.7 0.8 1.0 C A:ASN102 4.7 0.5 1.0 N A:ASN104 4.7 0.9 1.0 HG3 A:GLU69 4.7 0.5 1.0 C A:ASP103 4.8 0.5 1.0 HG2 A:GLU11 4.8 1.0 1.0 CG A:GLU11 4.8 0.3 1.0 C A:ASP136 4.9 0.9 1.0 HG2 A:GLU69 4.9 0.5 1.0 HD3 A:ARG68 4.9 0.7 1.0 HB2 A:ASP136 4.9 0.9 1.0 CG A:ASP101 5.0 0.4 1.0 CA A:CA605 5.0 0.4 1.0 HB3 A:ASP100 5.0 0.7 1.0

O.J.Harrison, J.Brasch, G.Lasso, P.S.Katsamba, G.Ahlsen, B.Honig, L.Shapiro. Structural Basis of Adhesive Binding By Desmocollins and Desmogleins. Proc.Natl.Acad.Sci.Usa V. 113 7160 2016.
ISSN: ESSN 1091-6490
PubMed: 27298358
DOI: 10.1073/PNAS.1606272113