Calcium in PDB 5j1z: Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature

Enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature

All present enzymatic activity of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature:
3.1.31.1;

Protein crystallography data

The structure of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature, PDB code: 5j1z was solved by L.A.Skerritt, J.L.Schlessman, B.Garcia-Moreno E., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	38.35 / 1.73
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	31.178, 60.353, 38.425, 90.00, 93.52, 90.00
*R / R_free (%)*	16.9 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature (pdb code 5j1z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature, PDB code: 5j1z:

Calcium binding site 1 out of 1 in 5j1z

Go back to

Calcium Binding Sites List in 5j1z

Calcium binding site 1 out of 1 in the Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca201 b:18.1 occ:1.00	OD1	A:ASP40	2.7	14.8	1.0
	OD2	A:ASP21	2.8	11.6	1.0
	O	A:HOH308	2.8	12.9	1.0
	OE2	A:GLU43	2.8	28.6	1.0
	O	A:HOH342	2.9	15.5	1.0
	O	A:THR41	2.9	14.4	1.0
	O6P	A:THP202	3.1	12.5	1.0
	O	A:HOH344	3.6	26.3	1.0
	CG	A:ASP21	3.6	11.4	1.0
	OD1	A:ASP21	3.7	10.6	1.0
	CG	A:ASP40	3.8	14.1	1.0
	CD	A:GLU43	3.9	28.7	1.0
	O	A:HOH350	4.0	24.5	1.0
	C	A:THR41	4.0	14.9	1.0
	NH2	A:ARG35	4.0	9.5	1.0
	O	A:HOH319	4.1	24.0	1.0
	N	A:THR41	4.1	11.9	1.0
	P2	A:THP202	4.1	12.8	1.0
	OG1	A:THR41	4.1	12.8	1.0
	O4P	A:THP202	4.2	12.8	1.0
	OD2	A:ASP40	4.4	15.0	1.0
	OE1	A:GLU43	4.5	25.9	1.0
	CA	A:THR41	4.5	13.1	1.0
	O	A:HOH331	4.6	20.9	1.0
	CA	A:ASP40	4.6	11.3	1.0
	CZ	A:ARG35	4.6	9.3	1.0
	O5P	A:THP202	4.7	15.0	1.0
	C	A:ASP40	4.7	11.8	1.0
	NE	A:ARG35	4.8	9.2	1.0
	CB	A:ASP40	4.8	12.3	1.0
	CG	A:GLU43	4.8	27.0	1.0
	CB	A:THR41	4.9	13.1	1.0

Reference:

L.A.Skerritt, J.L.Schlessman, B.Garcia-Moreno E.. Crystal Structure of Staphylococcal Nuclease Variant Delta+Phs A90D at Cryogenic Temperature To Be Published.

Page generated: Wed Jul 9 07:00:09 2025

Last articles

Ca in 7KEV
Ca in 7KBH
Ca in 7KDP
Ca in 7KDD
Ca in 7KBT
Ca in 7KBR
Ca in 7KBJ
Ca in 7KBG
Ca in 7KB8
Ca in 7KB6

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy