Calcium in PDB 5j5j: Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5

The structure of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5, PDB code: 5j5j was solved by J.Brasch, O.J.Harrison, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.30 / 3.29
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.494, 87.489, 218.536, 90.00, 90.00, 90.00
R / Rfree (%)	24.7 / 28.5

The structure of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 (pdb code 5j5j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5, PDB code: 5j5j:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca622 b:0.0 occ:1.00 OE2 A:GLU11 2.3 0.7 1.0 OD1 A:ASP67 2.4 0.5 1.0 OE1 A:GLU69 2.4 0.8 1.0 OD2 A:ASP67 2.5 0.2 1.0 OD2 A:ASP103 2.5 0.9 1.0 CG A:ASP67 2.6 0.9 1.0 CG A:ASP103 3.2 0.3 1.0 CD A:GLU69 3.2 0.3 1.0 CD A:GLU11 3.5 0.0 1.0 OE2 A:GLU69 3.6 0.8 1.0 HD21 A:ASN12 3.6 0.5 1.0 OD1 A:ASP103 3.7 0.7 1.0 HB2 A:GLU69 3.8 0.1 1.0 HB2 A:ASP103 3.8 0.7 1.0 HA A:ASP67 3.8 0.8 1.0 H A:GLU69 3.9 0.3 1.0 CB A:ASP67 3.9 0.4 1.0 HB2 A:ASP67 4.0 0.8 1.0 CB A:ASP103 4.1 0.6 1.0 OD1 A:ASN12 4.1 0.9 1.0 OE1 A:GLU11 4.1 0.3 1.0 H A:ARG68 4.3 0.8 1.0 CA A:ASP67 4.3 0.3 1.0 CG A:GLU69 4.4 0.9 1.0 ND2 A:ASN12 4.4 0.4 1.0 HB3 A:ASP103 4.4 0.7 1.0 CA A:CA623 4.5 0.5 1.0 CG A:GLU11 4.5 0.3 1.0 HG2 A:GLU11 4.5 0.9 1.0 CB A:GLU69 4.5 0.4 1.0 HB3 A:ASP67 4.6 0.8 1.0 HG2 A:GLU69 4.6 0.7 1.0 HG3 A:GLU11 4.6 0.9 1.0 N A:GLU69 4.7 0.6 1.0 N A:ARG68 4.7 0.6 1.0 CG A:ASN12 4.7 0.4 1.0 C A:ASP67 4.9 0.1 1.0

Calcium binding site 2 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca623 b:0.5 occ:1.00 OE2 A:GLU69 2.3 0.8 1.0 OD1 A:ASP136 2.4 0.6 1.0 OD1 A:ASP103 2.5 0.7 1.0 OD1 A:ASP100 2.6 0.0 1.0 CD A:GLU69 2.7 0.3 1.0 O A:ILE101 2.7 0.6 1.0 OE1 A:GLU69 2.8 0.8 1.0 OD2 A:ASP103 2.9 0.9 1.0 CG A:ASP103 3.0 0.3 1.0 OD2 A:ASP100 3.0 0.8 1.0 H A:ILE101 3.1 0.5 1.0 CG A:ASP100 3.1 0.5 1.0 HD3 A:ARG68 3.4 0.5 1.0 OE1 A:GLU11 3.4 0.3 1.0 HA A:ASP136 3.5 0.8 1.0 H A:ASP103 3.5 0.0 1.0 CG A:ASP136 3.6 0.3 1.0 C A:ILE101 3.8 0.2 1.0 CG A:GLU69 3.8 0.9 1.0 HG3 A:GLU69 3.8 0.7 1.0 N A:ILE101 3.9 0.1 1.0 HG13 A:ILE101 3.9 0.7 1.0 HD21 A:ASN104 3.9 0.9 1.0 HG2 A:GLU69 4.1 0.7 1.0 OE2 A:GLU11 4.2 0.7 1.0 HB3 A:ARG68 4.2 0.3 1.0 HD2 A:ARG68 4.2 0.5 1.0 CD A:ARG68 4.2 0.6 1.0 CD A:GLU11 4.2 0.0 1.0 HA A:ASP100 4.3 0.3 1.0 N A:ASP103 4.3 0.5 1.0 CA A:ASP136 4.3 0.3 1.0 CB A:ASP136 4.3 0.0 1.0 HB3 A:ASP136 4.3 0.0 1.0 HA A:ASN102 4.4 0.0 1.0 ND2 A:ASN104 4.4 0.4 1.0 CB A:ASP103 4.4 0.6 1.0 CA A:CA622 4.5 0.0 1.0 CB A:ASP100 4.5 0.1 1.0 CA A:ILE101 4.5 0.8 1.0 OD2 A:ASP136 4.6 0.1 1.0 H A:GLU137 4.6 0.2 1.0 OD1 A:ASN104 4.6 1.0 1.0 HB3 A:ASP103 4.7 0.7 1.0 CA A:ASP100 4.7 0.2 1.0 HD12 A:ILE101 4.8 0.4 1.0 N A:ASN102 4.8 0.7 1.0 CG1 A:ILE101 4.8 0.9 1.0 CG A:ASN104 4.8 0.0 1.0 C A:ASP100 4.8 0.5 1.0 H A:GLU69 4.8 0.3 1.0 HD22 A:ASN104 4.9 0.9 1.0 HB2 A:ASP100 4.9 0.9 1.0 CA A:ASP103 4.9 0.4 1.0 CA A:ASN102 4.9 0.5 1.0 NE A:ARG68 4.9 0.3 1.0 HE A:ARG68 5.0 0.2 1.0

Calcium binding site 3 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca624 b:0.2 occ:1.00 OD2 A:ASP134 2.4 0.6 1.0 OD1 A:ASN102 2.4 0.5 1.0 OD2 A:ASP136 2.5 0.1 1.0 OD1 A:ASP134 2.5 0.5 1.0 O A:ASN142 2.5 0.6 1.0 O A:ASN104 2.6 0.6 1.0 OD2 A:ASP192 2.6 0.8 1.0 CG A:ASP134 2.8 0.0 1.0 CG A:ASN102 3.3 0.9 1.0 CG A:ASP192 3.6 0.0 1.0 CG A:ASP136 3.7 0.3 1.0 HB3 A:ASP192 3.7 0.6 1.0 C A:ASN142 3.7 0.7 1.0 HB2 A:ASP192 3.7 0.6 1.0 OD1 A:ASN104 3.7 1.0 1.0 C A:ASN104 3.8 0.5 1.0 HA A:GLU105 3.8 0.9 1.0 HD3 A:PRO106 3.8 0.1 1.0 HD21 A:ASN102 3.9 0.8 1.0 HB2 A:ASP136 3.9 0.0 1.0 CB A:ASP192 3.9 0.4 1.0 HA A:ASN102 3.9 0.0 1.0 ND2 A:ASN102 3.9 0.3 1.0 H A:ASN104 4.0 0.1 1.0 HB3 A:ASN142 4.0 0.2 1.0 HA A:ASN142 4.1 0.6 1.0 HB2 A:ASN102 4.2 1.0 1.0 HA A:SER143 4.2 0.2 1.0 CB A:ASN102 4.2 0.1 1.0 CB A:ASP134 4.3 0.7 1.0 CB A:ASP136 4.4 0.0 1.0 CA A:ASN142 4.4 0.3 1.0 CA A:ASN102 4.5 0.5 1.0 CA A:GLU105 4.5 0.8 1.0 OD1 A:ASP136 4.6 0.6 1.0 N A:GLU105 4.6 0.9 1.0 HB2 A:ASP134 4.6 0.9 1.0 HB3 A:ASP134 4.7 0.9 1.0 HD22 A:ASN102 4.7 0.8 1.0 H A:ASP136 4.7 0.9 1.0 CD A:PRO106 4.7 0.8 1.0 CB A:ASN142 4.7 0.4 1.0 N A:ASN104 4.7 0.3 1.0 N A:SER143 4.7 0.3 1.0 OD1 A:ASP192 4.7 0.8 1.0 CA A:ASN104 4.8 0.8 1.0 C A:GLU105 4.8 0.6 1.0 CG A:ASN104 4.8 0.0 1.0 N A:PRO106 4.9 0.2 1.0 HB3 A:ASP136 4.9 0.0 1.0 HA A:ASP134 4.9 0.8 1.0 CA A:SER143 4.9 0.0 1.0

Calcium binding site 4 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca625 b:0.8 occ:1.00 OE2 A:GLU119 2.3 0.1 1.0 OD2 A:ASP216 2.4 0.6 1.0 OD2 A:ASP177 2.5 0.9 1.0 OE1 A:GLU179 2.5 0.6 1.0 CG A:ASP177 3.2 0.2 1.0 CG A:ASP216 3.4 1.0 1.0 CD A:GLU119 3.5 0.7 1.0 OD1 A:ASP177 3.5 0.7 1.0 HB2 A:GLU179 3.5 0.7 1.0 HD11 A:LEU120 3.7 0.9 1.0 CD A:GLU179 3.7 0.2 1.0 OD1 A:ASP216 3.8 0.5 1.0 H A:GLU179 3.9 0.2 1.0 HA A:ASP177 4.0 0.7 1.0 HD13 A:LEU120 4.0 0.9 1.0 OD1 A:ASN217 4.0 1.0 1.0 OE1 A:GLU119 4.1 0.6 1.0 CD1 A:LEU120 4.2 0.4 1.0 CB A:GLU179 4.3 0.4 1.0 CA A:CA626 4.3 0.6 1.0 H A:ARG178 4.4 0.1 1.0 CB A:ASP177 4.4 0.5 1.0 HD12 A:LEU120 4.4 0.9 1.0 CG A:GLU179 4.4 0.5 1.0 HG2 A:GLU179 4.4 1.0 1.0 HG2 A:GLU119 4.5 0.6 1.0 CG A:GLU119 4.5 1.0 1.0 HB2 A:ASP177 4.6 0.5 1.0 CA A:ASP177 4.6 0.2 1.0 HB2 A:ASP216 4.6 0.2 1.0 HD21 A:ASN217 4.7 0.3 1.0 CB A:ASP216 4.7 0.9 1.0 OE2 A:GLU179 4.7 0.7 1.0 N A:GLU179 4.7 0.8 1.0 HG3 A:GLU119 4.8 0.6 1.0 N A:ARG178 4.8 0.4 1.0 HB3 A:GLU179 5.0 0.7 1.0

Calcium binding site 5 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca626 b:0.6 occ:1.00 OE2 A:GLU179 2.3 0.7 1.0 OD1 A:ASP216 2.3 0.5 1.0 OD1 A:ASP213 2.4 0.1 1.0 OE1 A:GLU119 2.6 0.6 1.0 OE1 A:GLU179 2.6 0.6 1.0 OD1 A:ASP248 2.6 0.4 1.0 O A:VAL214 2.7 0.2 1.0 CD A:GLU179 2.7 0.2 1.0 H A:VAL214 3.1 0.3 1.0 CG A:ASP216 3.4 1.0 1.0 CD A:GLU119 3.5 0.7 1.0 HA A:ASP248 3.5 1.0 1.0 H A:ASP216 3.6 0.1 1.0 CG A:ASP213 3.6 0.2 1.0 HE A:ARG178 3.6 0.1 1.0 OE2 A:GLU119 3.7 0.1 1.0 HG12 A:VAL214 3.8 0.6 1.0 CG A:ASP248 3.8 0.6 1.0 OD2 A:ASP216 3.8 0.6 1.0 C A:VAL214 3.8 0.1 1.0 N A:VAL214 3.9 0.1 1.0 OD1 A:ASN217 3.9 1.0 1.0 HB3 A:ARG178 3.9 0.7 1.0 HG13 A:VAL214 4.0 0.6 1.0 HA A:ASP213 4.1 0.9 1.0 OD2 A:ASP213 4.2 0.6 1.0 CG A:GLU179 4.2 0.5 1.0 HB3 A:ASP248 4.2 0.1 1.0 CA A:ASP248 4.3 0.5 1.0 N A:ASP216 4.3 0.4 1.0 CB A:ASP248 4.3 0.2 1.0 CG1 A:VAL214 4.3 0.0 1.0 CA A:CA625 4.3 0.8 1.0 HG2 A:GLU179 4.4 1.0 1.0 NE A:ARG178 4.5 0.9 1.0 CA A:VAL214 4.5 0.5 1.0 HG3 A:GLU179 4.5 1.0 1.0 CB A:ASP216 4.6 0.9 1.0 HD3 A:ARG178 4.6 0.6 1.0 HH21 A:ARG178 4.6 0.8 1.0 HA A:ASN215 4.6 0.8 1.0 H A:GLU179 4.7 0.2 1.0 H A:GLU249 4.7 0.5 1.0 CB A:ASP213 4.7 0.1 1.0 CA A:ASP213 4.8 0.2 1.0 OD2 A:ASP248 4.8 0.9 1.0 HB3 A:ASP216 4.8 0.2 1.0 CB A:ARG178 4.8 0.9 1.0 C A:ASP213 4.8 0.8 1.0 HB3 A:GLU119 4.9 0.7 1.0 CG A:GLU119 4.9 1.0 1.0 N A:ASN215 4.9 0.1 1.0 H A:ARG178 4.9 0.1 1.0 CA A:ASP216 4.9 0.4 1.0 HB2 A:ARG178 5.0 0.7 1.0

Calcium binding site 6 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca627 b:1.0 occ:1.00 HD21 A:ASN305 1.8 0.9 1.0 ND2 A:ASN305 2.3 0.1 1.0 O A:ASN254 2.3 0.1 1.0 OD1 A:ASN305 2.5 0.5 1.0 OD2 A:ASP246 2.5 0.3 1.0 OD1 A:ASP246 2.5 0.2 1.0 OD1 A:ASN215 2.6 0.7 1.0 CG A:ASN305 2.6 0.8 1.0 OD2 A:ASP248 2.7 0.9 1.0 O A:ASN217 2.7 1.0 1.0 CG A:ASP246 2.8 0.5 1.0 HD22 A:ASN305 2.9 0.9 1.0 C A:ASN254 3.5 0.1 1.0 HA A:TRP255 3.6 0.1 1.0 CG A:ASN215 3.7 0.7 1.0 HB2 A:ASP248 3.7 0.1 1.0 HG3 A:PRO219 3.8 0.6 1.0 HD3 A:PRO219 3.8 0.4 1.0 CG A:ASP248 3.9 0.6 1.0 CB A:ASN305 4.0 0.4 1.0 HD21 A:ASN215 4.0 0.6 1.0 C A:ASN217 4.0 0.7 1.0 HB3 A:ASN305 4.1 0.7 1.0 H A:ASN217 4.1 0.4 1.0 CB A:ASP246 4.2 0.2 1.0 ND2 A:ASN215 4.3 0.2 1.0 HB2 A:ASN305 4.3 0.7 1.0 CB A:ASP248 4.3 0.2 1.0 HA A:ASN254 4.4 0.8 1.0 HB2 A:ASN217 4.4 0.9 1.0 HB3 A:ASN254 4.4 0.8 1.0 N A:TRP255 4.4 0.7 1.0 CA A:TRP255 4.4 0.3 1.0 HE1 A:PHE309 4.5 0.4 1.0 H A:ASP248 4.5 0.9 1.0 HB2 A:ASP246 4.5 0.5 1.0 HA A:ILE218 4.5 0.6 1.0 HA A:ASN215 4.5 0.8 1.0 CA A:ASN254 4.5 0.5 1.0 CD A:PRO219 4.5 0.2 1.0 HB3 A:ASP246 4.6 0.5 1.0 CG A:PRO219 4.6 0.5 1.0 CA A:ASN217 4.8 0.5 1.0 N A:ASN217 4.8 0.1 1.0 HB3 A:ASP248 4.9 0.1 1.0 N A:PRO219 4.9 0.1 1.0 CB A:ASN215 4.9 0.5 1.0 OD1 A:ASP248 4.9 0.4 1.0 N A:ILE218 4.9 0.8 1.0 CB A:ASN254 5.0 0.3 1.0 CB A:ASN217 5.0 0.4 1.0

Calcium binding site 7 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca628 b:0.1 occ:1.00 OE2 A:GLU292 2.3 0.5 1.0 OE2 A:GLU333 2.5 0.2 1.0 OE1 A:GLU232 2.5 0.5 1.0 OE1 A:GLU292 2.5 0.1 1.0 O A:VAL331 2.5 0.3 1.0 OD1 A:ASP368 2.7 0.4 1.0 OE2 A:GLU232 2.7 0.4 1.0 CD A:GLU292 2.7 0.4 1.0 OD1 A:ASN330 2.7 0.1 1.0 CD A:GLU232 2.9 0.8 1.0 H A:VAL331 3.0 0.5 1.0 CD A:GLU333 3.5 0.4 1.0 HG3 A:GLU333 3.6 0.4 1.0 C A:VAL331 3.7 0.1 1.0 HG13 A:VAL331 3.8 0.8 1.0 N A:VAL331 3.8 0.7 1.0 CG A:ASP368 3.8 0.7 1.0 HG12 A:VAL331 3.8 0.8 1.0 CG A:ASN330 3.9 0.4 1.0 CG A:GLU333 4.0 0.5 1.0 HA A:ASP368 4.0 0.6 1.0 HD2 A:TYR291 4.1 0.6 1.0 HB2 A:GLU333 4.1 0.3 1.0 CA A:CA629 4.1 0.1 1.0 HB3 A:TYR291 4.2 0.5 1.0 CG A:GLU292 4.2 0.3 1.0 CG1 A:VAL331 4.3 0.7 1.0 HD21 A:ASN330 4.3 0.9 1.0 CA A:VAL331 4.3 0.1 1.0 HA A:ASN330 4.4 0.3 1.0 CG A:GLU232 4.4 0.3 1.0 HG2 A:GLU292 4.5 0.2 1.0 OE1 A:GLU333 4.5 0.3 1.0 H A:GLU292 4.5 0.6 1.0 ND2 A:ASN330 4.5 0.8 1.0 OD2 A:ASP368 4.6 0.2 1.0 HG3 A:GLU292 4.6 0.2 1.0 HA A:LYS332 4.6 0.6 1.0 HG2 A:GLU367 4.6 0.5 1.0 CB A:GLU333 4.6 0.1 1.0 H A:GLU333 4.7 0.4 1.0 CB A:ASP368 4.7 0.2 1.0 OD1 A:ASP290 4.7 0.1 1.0 HB3 A:ASP368 4.7 0.8 1.0 HG2 A:GLU232 4.8 0.9 1.0 N A:LYS332 4.8 0.8 1.0 CA A:ASP368 4.8 0.1 1.0 HB3 A:GLU232 4.8 0.5 1.0 N A:GLU333 4.9 0.5 1.0 C A:ASN330 4.9 0.7 1.0 HG2 A:GLU333 4.9 0.4 1.0 CD2 A:TYR291 4.9 0.3 1.0 HG3 A:GLU232 4.9 0.9 1.0 CA A:ASN330 5.0 0.4 1.0 CB A:VAL331 5.0 0.5 1.0 HB2 A:GLU292 5.0 1.0 1.0

Calcium binding site 8 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca629 b:0.1 occ:1.00 OD1 A:ASP290 2.2 0.1 1.0 OE2 A:GLU333 2.4 0.2 1.0 OE2 A:GLU367 2.4 1.0 1.0 OE1 A:GLU292 2.5 0.1 1.0 OE1 A:GLU333 2.5 0.3 1.0 OE2 A:GLU232 2.6 0.4 1.0 CG A:ASP290 2.6 0.5 1.0 OD2 A:ASP290 2.8 0.2 1.0 CD A:GLU333 2.8 0.4 1.0 CD A:GLU367 3.1 0.8 1.0 HG2 A:GLU367 3.2 0.5 1.0 HB2 A:GLU292 3.4 1.0 1.0 HD21 A:ASN233 3.6 0.2 1.0 CG A:GLU367 3.7 0.6 1.0 CD A:GLU292 3.8 0.4 1.0 CB A:ASP290 3.8 0.6 1.0 CD A:GLU232 3.8 0.8 1.0 HA A:ASP290 3.8 0.6 1.0 HB2 A:ASP290 3.9 0.5 1.0 H A:GLU292 4.0 0.6 1.0 OE1 A:GLU367 4.0 0.2 1.0 HG3 A:GLU367 4.1 0.5 1.0 CA A:CA628 4.1 0.1 1.0 O A:HOH704 4.3 0.3 1.0 CB A:GLU292 4.3 0.5 1.0 CG A:GLU333 4.3 0.5 1.0 CA A:ASP290 4.3 0.2 1.0 ND2 A:ASN233 4.4 0.2 1.0 CG A:GLU292 4.5 0.3 1.0 OD1 A:ASN233 4.5 0.3 1.0 H A:TYR291 4.5 0.8 1.0 HG2 A:GLU232 4.5 0.9 1.0 HG2 A:GLU292 4.6 0.2 1.0 HB3 A:ASP290 4.6 0.5 1.0 HG3 A:GLU232 4.6 0.9 1.0 CG A:GLU232 4.6 0.3 1.0 HB2 A:GLU333 4.7 0.3 1.0 OE2 A:GLU292 4.7 0.5 1.0 OE1 A:GLU232 4.7 0.5 1.0 HG3 A:GLU333 4.8 0.4 1.0 N A:GLU292 4.8 1.0 1.0 HG2 A:GLU333 4.8 0.4 1.0 N A:TYR291 4.9 0.7 1.0 HB3 A:GLU292 4.9 1.0 1.0 CG A:ASN233 4.9 0.5 1.0 C A:ASP290 4.9 1.0 1.0 HB3 A:GLU367 4.9 0.1 1.0 CB A:GLU367 5.0 0.1 1.0 CB A:GLU333 5.0 0.1 1.0

Calcium binding site 9 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca630 b:0.0 occ:1.00 OE2 A:GLU405 2.3 0.1 1.0 OD1 A:ASP443 2.3 0.8 1.0 OE1 A:GLU405 2.4 0.1 1.0 OE1 A:GLU348 2.4 0.7 1.0 OD1 A:ASP440 2.6 0.0 1.0 CD A:GLU405 2.6 0.8 1.0 O A:ILE441 2.7 0.5 1.0 OD1 A:ASP470 2.7 0.5 1.0 OE2 A:GLU348 2.8 0.6 1.0 CD A:GLU348 3.0 0.7 1.0 HB3 A:PHE404 3.1 0.9 1.0 CG A:ASP443 3.2 0.8 1.0 H A:ILE441 3.2 0.6 1.0 H A:ASP443 3.5 0.7 1.0 OD2 A:ASP443 3.6 1.0 1.0 CG A:ASP440 3.8 0.1 1.0 C A:ILE441 3.8 0.2 1.0 N A:ILE441 3.8 0.2 1.0 HG22 A:ILE441 3.8 0.2 1.0 HA A:ASP440 3.9 0.8 1.0 CG A:ASP470 3.9 0.9 1.0 HG23 A:ILE441 3.9 0.2 1.0 HD22 A:ASN444 4.0 0.3 1.0 HD1 A:PHE404 4.0 0.8 1.0 CB A:PHE404 4.1 0.4 1.0 CA A:CA631 4.1 0.3 1.0 CG A:GLU405 4.1 0.0 1.0 N A:ASP443 4.3 0.9 1.0 CG2 A:ILE441 4.3 0.1 1.0 HA A:ASP470 4.3 0.5 1.0 CB A:ASP443 4.4 0.6 1.0 CA A:ILE441 4.4 0.7 1.0 HB2 A:PHE404 4.4 0.9 1.0 HB3 A:ASP443 4.4 0.1 1.0 H A:GLU405 4.4 0.9 1.0 HG2 A:GLU405 4.4 0.0 1.0 CG A:GLU348 4.5 0.9 1.0 HG3 A:GLU405 4.5 0.0 1.0 CA A:ASP440 4.5 0.2 1.0 C A:ASP440 4.6 0.2 1.0 CD1 A:PHE404 4.6 0.0 1.0 OD2 A:ASP440 4.6 0.8 1.0 H A:PHE404 4.6 0.2 1.0 OD2 A:ASP470 4.7 0.3 1.0 CG A:PHE404 4.7 0.7 1.0 ND2 A:ASN444 4.7 0.9 1.0 CB A:ASP440 4.7 0.1 1.0 HA A:ASN442 4.7 0.8 1.0 HB3 A:GLU348 4.8 0.1 1.0 HG2 A:GLU348 4.8 0.4 1.0 N A:GLU405 4.8 0.9 1.0 CA A:ASP443 4.8 0.1 1.0 CB A:ASP470 4.9 0.7 1.0 HB3 A:ASP470 4.9 0.2 1.0 HB2 A:GLU405 4.9 0.1 1.0 N A:ASN442 4.9 0.7 1.0 HD21 A:ASN444 4.9 0.3 1.0 HB2 A:GLU348 5.0 0.1 1.0 HG3 A:GLU348 5.0 0.4 1.0

Calcium binding site 10 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca631 b:0.3 occ:1.00 OD1 A:ASP403 2.3 0.2 1.0 OD2 A:ASP443 2.3 1.0 1.0 OE1 A:GLU405 2.4 0.1 1.0 OE2 A:GLU348 2.4 0.6 1.0 HD21 A:ASN444 3.1 0.3 1.0 HB2 A:GLU405 3.1 0.1 1.0 CG A:ASP443 3.2 0.8 1.0 CG A:ASP403 3.4 0.4 1.0 OD1 A:ASP443 3.5 0.8 1.0 HD22 A:ASN444 3.5 0.3 1.0 CD A:GLU405 3.5 0.8 1.0 ND2 A:ASN444 3.6 0.9 1.0 CD A:GLU348 3.6 0.7 1.0 H A:GLU405 3.7 0.9 1.0 CB A:GLU405 4.0 0.6 1.0 OD2 A:ASP403 4.0 0.6 1.0 HG2 A:GLU405 4.0 0.0 1.0 CG A:GLU405 4.1 0.0 1.0 CA A:CA630 4.1 0.0 1.0 HA A:ASP403 4.2 0.9 1.0 HG3 A:GLU348 4.4 0.4 1.0 N A:GLU405 4.5 0.9 1.0 H A:PHE404 4.5 0.2 1.0 HG2 A:GLU348 4.5 0.4 1.0 CG A:GLU348 4.5 0.9 1.0 OE1 A:GLU348 4.5 0.7 1.0 CB A:ASP403 4.6 0.1 1.0 CB A:ASP443 4.6 0.6 1.0 HB3 A:GLU405 4.6 0.1 1.0 OE2 A:GLU405 4.6 0.1 1.0 HB2 A:ASP443 4.6 0.1 1.0 HB2 A:ASP403 4.7 0.5 1.0 CA A:ASP403 4.8 0.3 1.0 N A:PHE404 4.8 0.5 1.0 O A:ASP443 4.9 1.0 1.0 CA A:GLU405 4.9 0.1 1.0 CG A:ASN444 4.9 0.5 1.0

O.J.Harrison, J.Brasch, G.Lasso, P.S.Katsamba, G.Ahlsen, B.Honig, L.Shapiro. Structural Basis of Adhesive Binding By Desmocollins and Desmogleins. Proc.Natl.Acad.Sci.Usa V. 113 7160 2016.
ISSN: ESSN 1091-6490
PubMed: 27298358
DOI: 10.1073/PNAS.1606272113