Calcium in PDB 5j5j: Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5

Protein crystallography data

The structure of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5, PDB code: 5j5j was solved by J.Brasch, O.J.Harrison, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.30 / 3.29
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.494, 87.489, 218.536, 90.00, 90.00, 90.00
R / Rfree (%) 24.7 / 28.5

Other elements in 5j5j:

The structure of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 (pdb code 5j5j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5, PDB code: 5j5j:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in 5j5j

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Calcium binding site 1 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca622

b:0.0
occ:1.00
OE2 A:GLU11 2.3 0.7 1.0
OD1 A:ASP67 2.4 0.5 1.0
OE1 A:GLU69 2.4 0.8 1.0
OD2 A:ASP67 2.5 0.2 1.0
OD2 A:ASP103 2.5 0.9 1.0
CG A:ASP67 2.6 0.9 1.0
CG A:ASP103 3.2 0.3 1.0
CD A:GLU69 3.2 0.3 1.0
CD A:GLU11 3.5 0.0 1.0
OE2 A:GLU69 3.6 0.8 1.0
HD21 A:ASN12 3.6 0.5 1.0
OD1 A:ASP103 3.7 0.7 1.0
HB2 A:GLU69 3.8 0.1 1.0
HB2 A:ASP103 3.8 0.7 1.0
HA A:ASP67 3.8 0.8 1.0
H A:GLU69 3.9 0.3 1.0
CB A:ASP67 3.9 0.4 1.0
HB2 A:ASP67 4.0 0.8 1.0
CB A:ASP103 4.1 0.6 1.0
OD1 A:ASN12 4.1 0.9 1.0
OE1 A:GLU11 4.1 0.3 1.0
H A:ARG68 4.3 0.8 1.0
CA A:ASP67 4.3 0.3 1.0
CG A:GLU69 4.4 0.9 1.0
ND2 A:ASN12 4.4 0.4 1.0
HB3 A:ASP103 4.4 0.7 1.0
CA A:CA623 4.5 0.5 1.0
CG A:GLU11 4.5 0.3 1.0
HG2 A:GLU11 4.5 0.9 1.0
CB A:GLU69 4.5 0.4 1.0
HB3 A:ASP67 4.6 0.8 1.0
HG2 A:GLU69 4.6 0.7 1.0
HG3 A:GLU11 4.6 0.9 1.0
N A:GLU69 4.7 0.6 1.0
N A:ARG68 4.7 0.6 1.0
CG A:ASN12 4.7 0.4 1.0
C A:ASP67 4.9 0.1 1.0

Calcium binding site 2 out of 11 in 5j5j

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Calcium binding site 2 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca623

b:0.5
occ:1.00
OE2 A:GLU69 2.3 0.8 1.0
OD1 A:ASP136 2.4 0.6 1.0
OD1 A:ASP103 2.5 0.7 1.0
OD1 A:ASP100 2.6 0.0 1.0
CD A:GLU69 2.7 0.3 1.0
O A:ILE101 2.7 0.6 1.0
OE1 A:GLU69 2.8 0.8 1.0
OD2 A:ASP103 2.9 0.9 1.0
CG A:ASP103 3.0 0.3 1.0
OD2 A:ASP100 3.0 0.8 1.0
H A:ILE101 3.1 0.5 1.0
CG A:ASP100 3.1 0.5 1.0
HD3 A:ARG68 3.4 0.5 1.0
OE1 A:GLU11 3.4 0.3 1.0
HA A:ASP136 3.5 0.8 1.0
H A:ASP103 3.5 0.0 1.0
CG A:ASP136 3.6 0.3 1.0
C A:ILE101 3.8 0.2 1.0
CG A:GLU69 3.8 0.9 1.0
HG3 A:GLU69 3.8 0.7 1.0
N A:ILE101 3.9 0.1 1.0
HG13 A:ILE101 3.9 0.7 1.0
HD21 A:ASN104 3.9 0.9 1.0
HG2 A:GLU69 4.1 0.7 1.0
OE2 A:GLU11 4.2 0.7 1.0
HB3 A:ARG68 4.2 0.3 1.0
HD2 A:ARG68 4.2 0.5 1.0
CD A:ARG68 4.2 0.6 1.0
CD A:GLU11 4.2 0.0 1.0
HA A:ASP100 4.3 0.3 1.0
N A:ASP103 4.3 0.5 1.0
CA A:ASP136 4.3 0.3 1.0
CB A:ASP136 4.3 0.0 1.0
HB3 A:ASP136 4.3 0.0 1.0
HA A:ASN102 4.4 0.0 1.0
ND2 A:ASN104 4.4 0.4 1.0
CB A:ASP103 4.4 0.6 1.0
CA A:CA622 4.5 0.0 1.0
CB A:ASP100 4.5 0.1 1.0
CA A:ILE101 4.5 0.8 1.0
OD2 A:ASP136 4.6 0.1 1.0
H A:GLU137 4.6 0.2 1.0
OD1 A:ASN104 4.6 1.0 1.0
HB3 A:ASP103 4.7 0.7 1.0
CA A:ASP100 4.7 0.2 1.0
HD12 A:ILE101 4.8 0.4 1.0
N A:ASN102 4.8 0.7 1.0
CG1 A:ILE101 4.8 0.9 1.0
CG A:ASN104 4.8 0.0 1.0
C A:ASP100 4.8 0.5 1.0
H A:GLU69 4.8 0.3 1.0
HD22 A:ASN104 4.9 0.9 1.0
HB2 A:ASP100 4.9 0.9 1.0
CA A:ASP103 4.9 0.4 1.0
CA A:ASN102 4.9 0.5 1.0
NE A:ARG68 4.9 0.3 1.0
HE A:ARG68 5.0 0.2 1.0

Calcium binding site 3 out of 11 in 5j5j

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Calcium binding site 3 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca624

b:0.2
occ:1.00
OD2 A:ASP134 2.4 0.6 1.0
OD1 A:ASN102 2.4 0.5 1.0
OD2 A:ASP136 2.5 0.1 1.0
OD1 A:ASP134 2.5 0.5 1.0
O A:ASN142 2.5 0.6 1.0
O A:ASN104 2.6 0.6 1.0
OD2 A:ASP192 2.6 0.8 1.0
CG A:ASP134 2.8 0.0 1.0
CG A:ASN102 3.3 0.9 1.0
CG A:ASP192 3.6 0.0 1.0
CG A:ASP136 3.7 0.3 1.0
HB3 A:ASP192 3.7 0.6 1.0
C A:ASN142 3.7 0.7 1.0
HB2 A:ASP192 3.7 0.6 1.0
OD1 A:ASN104 3.7 1.0 1.0
C A:ASN104 3.8 0.5 1.0
HA A:GLU105 3.8 0.9 1.0
HD3 A:PRO106 3.8 0.1 1.0
HD21 A:ASN102 3.9 0.8 1.0
HB2 A:ASP136 3.9 0.0 1.0
CB A:ASP192 3.9 0.4 1.0
HA A:ASN102 3.9 0.0 1.0
ND2 A:ASN102 3.9 0.3 1.0
H A:ASN104 4.0 0.1 1.0
HB3 A:ASN142 4.0 0.2 1.0
HA A:ASN142 4.1 0.6 1.0
HB2 A:ASN102 4.2 1.0 1.0
HA A:SER143 4.2 0.2 1.0
CB A:ASN102 4.2 0.1 1.0
CB A:ASP134 4.3 0.7 1.0
CB A:ASP136 4.4 0.0 1.0
CA A:ASN142 4.4 0.3 1.0
CA A:ASN102 4.5 0.5 1.0
CA A:GLU105 4.5 0.8 1.0
OD1 A:ASP136 4.6 0.6 1.0
N A:GLU105 4.6 0.9 1.0
HB2 A:ASP134 4.6 0.9 1.0
HB3 A:ASP134 4.7 0.9 1.0
HD22 A:ASN102 4.7 0.8 1.0
H A:ASP136 4.7 0.9 1.0
CD A:PRO106 4.7 0.8 1.0
CB A:ASN142 4.7 0.4 1.0
N A:ASN104 4.7 0.3 1.0
N A:SER143 4.7 0.3 1.0
OD1 A:ASP192 4.7 0.8 1.0
CA A:ASN104 4.8 0.8 1.0
C A:GLU105 4.8 0.6 1.0
CG A:ASN104 4.8 0.0 1.0
N A:PRO106 4.9 0.2 1.0
HB3 A:ASP136 4.9 0.0 1.0
HA A:ASP134 4.9 0.8 1.0
CA A:SER143 4.9 0.0 1.0

Calcium binding site 4 out of 11 in 5j5j

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Calcium binding site 4 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca625

b:0.8
occ:1.00
OE2 A:GLU119 2.3 0.1 1.0
OD2 A:ASP216 2.4 0.6 1.0
OD2 A:ASP177 2.5 0.9 1.0
OE1 A:GLU179 2.5 0.6 1.0
CG A:ASP177 3.2 0.2 1.0
CG A:ASP216 3.4 1.0 1.0
CD A:GLU119 3.5 0.7 1.0
OD1 A:ASP177 3.5 0.7 1.0
HB2 A:GLU179 3.5 0.7 1.0
HD11 A:LEU120 3.7 0.9 1.0
CD A:GLU179 3.7 0.2 1.0
OD1 A:ASP216 3.8 0.5 1.0
H A:GLU179 3.9 0.2 1.0
HA A:ASP177 4.0 0.7 1.0
HD13 A:LEU120 4.0 0.9 1.0
OD1 A:ASN217 4.0 1.0 1.0
OE1 A:GLU119 4.1 0.6 1.0
CD1 A:LEU120 4.2 0.4 1.0
CB A:GLU179 4.3 0.4 1.0
CA A:CA626 4.3 0.6 1.0
H A:ARG178 4.4 0.1 1.0
CB A:ASP177 4.4 0.5 1.0
HD12 A:LEU120 4.4 0.9 1.0
CG A:GLU179 4.4 0.5 1.0
HG2 A:GLU179 4.4 1.0 1.0
HG2 A:GLU119 4.5 0.6 1.0
CG A:GLU119 4.5 1.0 1.0
HB2 A:ASP177 4.6 0.5 1.0
CA A:ASP177 4.6 0.2 1.0
HB2 A:ASP216 4.6 0.2 1.0
HD21 A:ASN217 4.7 0.3 1.0
CB A:ASP216 4.7 0.9 1.0
OE2 A:GLU179 4.7 0.7 1.0
N A:GLU179 4.7 0.8 1.0
HG3 A:GLU119 4.8 0.6 1.0
N A:ARG178 4.8 0.4 1.0
HB3 A:GLU179 5.0 0.7 1.0

Calcium binding site 5 out of 11 in 5j5j

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Calcium binding site 5 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca626

b:0.6
occ:1.00
OE2 A:GLU179 2.3 0.7 1.0
OD1 A:ASP216 2.3 0.5 1.0
OD1 A:ASP213 2.4 0.1 1.0
OE1 A:GLU119 2.6 0.6 1.0
OE1 A:GLU179 2.6 0.6 1.0
OD1 A:ASP248 2.6 0.4 1.0
O A:VAL214 2.7 0.2 1.0
CD A:GLU179 2.7 0.2 1.0
H A:VAL214 3.1 0.3 1.0
CG A:ASP216 3.4 1.0 1.0
CD A:GLU119 3.5 0.7 1.0
HA A:ASP248 3.5 1.0 1.0
H A:ASP216 3.6 0.1 1.0
CG A:ASP213 3.6 0.2 1.0
HE A:ARG178 3.6 0.1 1.0
OE2 A:GLU119 3.7 0.1 1.0
HG12 A:VAL214 3.8 0.6 1.0
CG A:ASP248 3.8 0.6 1.0
OD2 A:ASP216 3.8 0.6 1.0
C A:VAL214 3.8 0.1 1.0
N A:VAL214 3.9 0.1 1.0
OD1 A:ASN217 3.9 1.0 1.0
HB3 A:ARG178 3.9 0.7 1.0
HG13 A:VAL214 4.0 0.6 1.0
HA A:ASP213 4.1 0.9 1.0
OD2 A:ASP213 4.2 0.6 1.0
CG A:GLU179 4.2 0.5 1.0
HB3 A:ASP248 4.2 0.1 1.0
CA A:ASP248 4.3 0.5 1.0
N A:ASP216 4.3 0.4 1.0
CB A:ASP248 4.3 0.2 1.0
CG1 A:VAL214 4.3 0.0 1.0
CA A:CA625 4.3 0.8 1.0
HG2 A:GLU179 4.4 1.0 1.0
NE A:ARG178 4.5 0.9 1.0
CA A:VAL214 4.5 0.5 1.0
HG3 A:GLU179 4.5 1.0 1.0
CB A:ASP216 4.6 0.9 1.0
HD3 A:ARG178 4.6 0.6 1.0
HH21 A:ARG178 4.6 0.8 1.0
HA A:ASN215 4.6 0.8 1.0
H A:GLU179 4.7 0.2 1.0
H A:GLU249 4.7 0.5 1.0
CB A:ASP213 4.7 0.1 1.0
CA A:ASP213 4.8 0.2 1.0
OD2 A:ASP248 4.8 0.9 1.0
HB3 A:ASP216 4.8 0.2 1.0
CB A:ARG178 4.8 0.9 1.0
C A:ASP213 4.8 0.8 1.0
HB3 A:GLU119 4.9 0.7 1.0
CG A:GLU119 4.9 1.0 1.0
N A:ASN215 4.9 0.1 1.0
H A:ARG178 4.9 0.1 1.0
CA A:ASP216 4.9 0.4 1.0
HB2 A:ARG178 5.0 0.7 1.0

Calcium binding site 6 out of 11 in 5j5j

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Calcium binding site 6 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca627

b:1.0
occ:1.00
HD21 A:ASN305 1.8 0.9 1.0
ND2 A:ASN305 2.3 0.1 1.0
O A:ASN254 2.3 0.1 1.0
OD1 A:ASN305 2.5 0.5 1.0
OD2 A:ASP246 2.5 0.3 1.0
OD1 A:ASP246 2.5 0.2 1.0
OD1 A:ASN215 2.6 0.7 1.0
CG A:ASN305 2.6 0.8 1.0
OD2 A:ASP248 2.7 0.9 1.0
O A:ASN217 2.7 1.0 1.0
CG A:ASP246 2.8 0.5 1.0
HD22 A:ASN305 2.9 0.9 1.0
C A:ASN254 3.5 0.1 1.0
HA A:TRP255 3.6 0.1 1.0
CG A:ASN215 3.7 0.7 1.0
HB2 A:ASP248 3.7 0.1 1.0
HG3 A:PRO219 3.8 0.6 1.0
HD3 A:PRO219 3.8 0.4 1.0
CG A:ASP248 3.9 0.6 1.0
CB A:ASN305 4.0 0.4 1.0
HD21 A:ASN215 4.0 0.6 1.0
C A:ASN217 4.0 0.7 1.0
HB3 A:ASN305 4.1 0.7 1.0
H A:ASN217 4.1 0.4 1.0
CB A:ASP246 4.2 0.2 1.0
ND2 A:ASN215 4.3 0.2 1.0
HB2 A:ASN305 4.3 0.7 1.0
CB A:ASP248 4.3 0.2 1.0
HA A:ASN254 4.4 0.8 1.0
HB2 A:ASN217 4.4 0.9 1.0
HB3 A:ASN254 4.4 0.8 1.0
N A:TRP255 4.4 0.7 1.0
CA A:TRP255 4.4 0.3 1.0
HE1 A:PHE309 4.5 0.4 1.0
H A:ASP248 4.5 0.9 1.0
HB2 A:ASP246 4.5 0.5 1.0
HA A:ILE218 4.5 0.6 1.0
HA A:ASN215 4.5 0.8 1.0
CA A:ASN254 4.5 0.5 1.0
CD A:PRO219 4.5 0.2 1.0
HB3 A:ASP246 4.6 0.5 1.0
CG A:PRO219 4.6 0.5 1.0
CA A:ASN217 4.8 0.5 1.0
N A:ASN217 4.8 0.1 1.0
HB3 A:ASP248 4.9 0.1 1.0
N A:PRO219 4.9 0.1 1.0
CB A:ASN215 4.9 0.5 1.0
OD1 A:ASP248 4.9 0.4 1.0
N A:ILE218 4.9 0.8 1.0
CB A:ASN254 5.0 0.3 1.0
CB A:ASN217 5.0 0.4 1.0

Calcium binding site 7 out of 11 in 5j5j

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Calcium binding site 7 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca628

b:0.1
occ:1.00
OE2 A:GLU292 2.3 0.5 1.0
OE2 A:GLU333 2.5 0.2 1.0
OE1 A:GLU232 2.5 0.5 1.0
OE1 A:GLU292 2.5 0.1 1.0
O A:VAL331 2.5 0.3 1.0
OD1 A:ASP368 2.7 0.4 1.0
OE2 A:GLU232 2.7 0.4 1.0
CD A:GLU292 2.7 0.4 1.0
OD1 A:ASN330 2.7 0.1 1.0
CD A:GLU232 2.9 0.8 1.0
H A:VAL331 3.0 0.5 1.0
CD A:GLU333 3.5 0.4 1.0
HG3 A:GLU333 3.6 0.4 1.0
C A:VAL331 3.7 0.1 1.0
HG13 A:VAL331 3.8 0.8 1.0
N A:VAL331 3.8 0.7 1.0
CG A:ASP368 3.8 0.7 1.0
HG12 A:VAL331 3.8 0.8 1.0
CG A:ASN330 3.9 0.4 1.0
CG A:GLU333 4.0 0.5 1.0
HA A:ASP368 4.0 0.6 1.0
HD2 A:TYR291 4.1 0.6 1.0
HB2 A:GLU333 4.1 0.3 1.0
CA A:CA629 4.1 0.1 1.0
HB3 A:TYR291 4.2 0.5 1.0
CG A:GLU292 4.2 0.3 1.0
CG1 A:VAL331 4.3 0.7 1.0
HD21 A:ASN330 4.3 0.9 1.0
CA A:VAL331 4.3 0.1 1.0
HA A:ASN330 4.4 0.3 1.0
CG A:GLU232 4.4 0.3 1.0
HG2 A:GLU292 4.5 0.2 1.0
OE1 A:GLU333 4.5 0.3 1.0
H A:GLU292 4.5 0.6 1.0
ND2 A:ASN330 4.5 0.8 1.0
OD2 A:ASP368 4.6 0.2 1.0
HG3 A:GLU292 4.6 0.2 1.0
HA A:LYS332 4.6 0.6 1.0
HG2 A:GLU367 4.6 0.5 1.0
CB A:GLU333 4.6 0.1 1.0
H A:GLU333 4.7 0.4 1.0
CB A:ASP368 4.7 0.2 1.0
OD1 A:ASP290 4.7 0.1 1.0
HB3 A:ASP368 4.7 0.8 1.0
HG2 A:GLU232 4.8 0.9 1.0
N A:LYS332 4.8 0.8 1.0
CA A:ASP368 4.8 0.1 1.0
HB3 A:GLU232 4.8 0.5 1.0
N A:GLU333 4.9 0.5 1.0
C A:ASN330 4.9 0.7 1.0
HG2 A:GLU333 4.9 0.4 1.0
CD2 A:TYR291 4.9 0.3 1.0
HG3 A:GLU232 4.9 0.9 1.0
CA A:ASN330 5.0 0.4 1.0
CB A:VAL331 5.0 0.5 1.0
HB2 A:GLU292 5.0 1.0 1.0

Calcium binding site 8 out of 11 in 5j5j

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Calcium binding site 8 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca629

b:0.1
occ:1.00
OD1 A:ASP290 2.2 0.1 1.0
OE2 A:GLU333 2.4 0.2 1.0
OE2 A:GLU367 2.4 1.0 1.0
OE1 A:GLU292 2.5 0.1 1.0
OE1 A:GLU333 2.5 0.3 1.0
OE2 A:GLU232 2.6 0.4 1.0
CG A:ASP290 2.6 0.5 1.0
OD2 A:ASP290 2.8 0.2 1.0
CD A:GLU333 2.8 0.4 1.0
CD A:GLU367 3.1 0.8 1.0
HG2 A:GLU367 3.2 0.5 1.0
HB2 A:GLU292 3.4 1.0 1.0
HD21 A:ASN233 3.6 0.2 1.0
CG A:GLU367 3.7 0.6 1.0
CD A:GLU292 3.8 0.4 1.0
CB A:ASP290 3.8 0.6 1.0
CD A:GLU232 3.8 0.8 1.0
HA A:ASP290 3.8 0.6 1.0
HB2 A:ASP290 3.9 0.5 1.0
H A:GLU292 4.0 0.6 1.0
OE1 A:GLU367 4.0 0.2 1.0
HG3 A:GLU367 4.1 0.5 1.0
CA A:CA628 4.1 0.1 1.0
O A:HOH704 4.3 0.3 1.0
CB A:GLU292 4.3 0.5 1.0
CG A:GLU333 4.3 0.5 1.0
CA A:ASP290 4.3 0.2 1.0
ND2 A:ASN233 4.4 0.2 1.0
CG A:GLU292 4.5 0.3 1.0
OD1 A:ASN233 4.5 0.3 1.0
H A:TYR291 4.5 0.8 1.0
HG2 A:GLU232 4.5 0.9 1.0
HG2 A:GLU292 4.6 0.2 1.0
HB3 A:ASP290 4.6 0.5 1.0
HG3 A:GLU232 4.6 0.9 1.0
CG A:GLU232 4.6 0.3 1.0
HB2 A:GLU333 4.7 0.3 1.0
OE2 A:GLU292 4.7 0.5 1.0
OE1 A:GLU232 4.7 0.5 1.0
HG3 A:GLU333 4.8 0.4 1.0
N A:GLU292 4.8 1.0 1.0
HG2 A:GLU333 4.8 0.4 1.0
N A:TYR291 4.9 0.7 1.0
HB3 A:GLU292 4.9 1.0 1.0
CG A:ASN233 4.9 0.5 1.0
C A:ASP290 4.9 1.0 1.0
HB3 A:GLU367 4.9 0.1 1.0
CB A:GLU367 5.0 0.1 1.0
CB A:GLU333 5.0 0.1 1.0

Calcium binding site 9 out of 11 in 5j5j

Go back to Calcium Binding Sites List in 5j5j
Calcium binding site 9 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca630

b:0.0
occ:1.00
OE2 A:GLU405 2.3 0.1 1.0
OD1 A:ASP443 2.3 0.8 1.0
OE1 A:GLU405 2.4 0.1 1.0
OE1 A:GLU348 2.4 0.7 1.0
OD1 A:ASP440 2.6 0.0 1.0
CD A:GLU405 2.6 0.8 1.0
O A:ILE441 2.7 0.5 1.0
OD1 A:ASP470 2.7 0.5 1.0
OE2 A:GLU348 2.8 0.6 1.0
CD A:GLU348 3.0 0.7 1.0
HB3 A:PHE404 3.1 0.9 1.0
CG A:ASP443 3.2 0.8 1.0
H A:ILE441 3.2 0.6 1.0
H A:ASP443 3.5 0.7 1.0
OD2 A:ASP443 3.6 1.0 1.0
CG A:ASP440 3.8 0.1 1.0
C A:ILE441 3.8 0.2 1.0
N A:ILE441 3.8 0.2 1.0
HG22 A:ILE441 3.8 0.2 1.0
HA A:ASP440 3.9 0.8 1.0
CG A:ASP470 3.9 0.9 1.0
HG23 A:ILE441 3.9 0.2 1.0
HD22 A:ASN444 4.0 0.3 1.0
HD1 A:PHE404 4.0 0.8 1.0
CB A:PHE404 4.1 0.4 1.0
CA A:CA631 4.1 0.3 1.0
CG A:GLU405 4.1 0.0 1.0
N A:ASP443 4.3 0.9 1.0
CG2 A:ILE441 4.3 0.1 1.0
HA A:ASP470 4.3 0.5 1.0
CB A:ASP443 4.4 0.6 1.0
CA A:ILE441 4.4 0.7 1.0
HB2 A:PHE404 4.4 0.9 1.0
HB3 A:ASP443 4.4 0.1 1.0
H A:GLU405 4.4 0.9 1.0
HG2 A:GLU405 4.4 0.0 1.0
CG A:GLU348 4.5 0.9 1.0
HG3 A:GLU405 4.5 0.0 1.0
CA A:ASP440 4.5 0.2 1.0
C A:ASP440 4.6 0.2 1.0
CD1 A:PHE404 4.6 0.0 1.0
OD2 A:ASP440 4.6 0.8 1.0
H A:PHE404 4.6 0.2 1.0
OD2 A:ASP470 4.7 0.3 1.0
CG A:PHE404 4.7 0.7 1.0
ND2 A:ASN444 4.7 0.9 1.0
CB A:ASP440 4.7 0.1 1.0
HA A:ASN442 4.7 0.8 1.0
HB3 A:GLU348 4.8 0.1 1.0
HG2 A:GLU348 4.8 0.4 1.0
N A:GLU405 4.8 0.9 1.0
CA A:ASP443 4.8 0.1 1.0
CB A:ASP470 4.9 0.7 1.0
HB3 A:ASP470 4.9 0.2 1.0
HB2 A:GLU405 4.9 0.1 1.0
N A:ASN442 4.9 0.7 1.0
HD21 A:ASN444 4.9 0.3 1.0
HB2 A:GLU348 5.0 0.1 1.0
HG3 A:GLU348 5.0 0.4 1.0

Calcium binding site 10 out of 11 in 5j5j

Go back to Calcium Binding Sites List in 5j5j
Calcium binding site 10 out of 11 in the Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of A Chimera of Human Desmocollin-2 EC1 and Human Desmoglein-2 EC2-EC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca631

b:0.3
occ:1.00
OD1 A:ASP403 2.3 0.2 1.0
OD2 A:ASP443 2.3 1.0 1.0
OE1 A:GLU405 2.4 0.1 1.0
OE2 A:GLU348 2.4 0.6 1.0
HD21 A:ASN444 3.1 0.3 1.0
HB2 A:GLU405 3.1 0.1 1.0
CG A:ASP443 3.2 0.8 1.0
CG A:ASP403 3.4 0.4 1.0
OD1 A:ASP443 3.5 0.8 1.0
HD22 A:ASN444 3.5 0.3 1.0
CD A:GLU405 3.5 0.8 1.0
ND2 A:ASN444 3.6 0.9 1.0
CD A:GLU348 3.6 0.7 1.0
H A:GLU405 3.7 0.9 1.0
CB A:GLU405 4.0 0.6 1.0
OD2 A:ASP403 4.0 0.6 1.0
HG2 A:GLU405 4.0 0.0 1.0
CG A:GLU405 4.1 0.0 1.0
CA A:CA630 4.1 0.0 1.0
HA A:ASP403 4.2 0.9 1.0
HG3 A:GLU348 4.4 0.4 1.0
N A:GLU405 4.5 0.9 1.0
H A:PHE404 4.5 0.2 1.0
HG2 A:GLU348 4.5 0.4 1.0
CG A:GLU348 4.5 0.9 1.0
OE1 A:GLU348 4.5 0.7 1.0
CB A:ASP403 4.6 0.1 1.0
CB A:ASP443 4.6 0.6 1.0
HB3 A:GLU405 4.6 0.1 1.0
OE2 A:GLU405 4.6 0.1 1.0
HB2 A:ASP443 4.6 0.1 1.0
HB2 A:ASP403 4.7 0.5 1.0
CA A:ASP403 4.8 0.3 1.0
N A:PHE404 4.8 0.5 1.0
O A:ASP443 4.9 1.0 1.0
CA A:GLU405 4.9 0.1 1.0
CG A:ASN444 4.9 0.5 1.0

Reference:

O.J.Harrison, J.Brasch, G.Lasso, P.S.Katsamba, G.Ahlsen, B.Honig, L.Shapiro. Structural Basis of Adhesive Binding By Desmocollins and Desmogleins. Proc.Natl.Acad.Sci.Usa V. 113 7160 2016.
ISSN: ESSN 1091-6490
PubMed: 27298358
DOI: 10.1073/PNAS.1606272113
Page generated: Sat Dec 12 05:31:22 2020

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