Calcium in PDB 5j60: Structure of A Thioredoxin Reductase From Gloeobacter Violaceus

The structure of Structure of A Thioredoxin Reductase From Gloeobacter Violaceus, PDB code: 5j60 was solved by R.M.Buey, J.M.De Pereda, M.Balsera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.22 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	83.278, 122.042, 139.153, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.2

The binding sites of Calcium atom in the Structure of A Thioredoxin Reductase From Gloeobacter Violaceus (pdb code 5j60). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of A Thioredoxin Reductase From Gloeobacter Violaceus, PDB code: 5j60:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of A Thioredoxin Reductase From Gloeobacter Violaceus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Thioredoxin Reductase From Gloeobacter Violaceus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:40.2 occ:1.00 OE1 A:GLU264 2.3 55.4 1.0 O3 A:PG4403 2.3 53.4 1.0 O4 A:PG4403 2.4 43.7 1.0 OE1 D:GLU264 2.4 57.6 1.0 OE2 D:GLU264 2.4 64.7 1.0 OE2 A:GLU264 2.4 52.0 1.0 O2 A:PG4403 2.5 46.8 1.0 H11 A:PG4403 2.6 62.1 1.0 O5 A:PG4403 2.6 48.7 1.0 CD A:GLU264 2.7 53.2 1.0 CD D:GLU264 2.7 57.5 1.0 H72 A:PG4403 2.8 52.8 1.0 C7 A:PG4403 3.0 44.0 1.0 C1 A:PG4403 3.0 51.8 1.0 HO5 A:PG4403 3.1 58.5 1.0 O1 A:PG4403 3.1 55.3 1.0 C2 A:PG4403 3.1 46.6 1.0 C4 A:PG4403 3.2 50.7 1.0 C3 A:PG4403 3.3 46.8 1.0 H42 A:PG4403 3.3 60.8 1.0 C6 A:PG4403 3.3 45.3 1.0 C8 A:PG4403 3.3 47.1 1.0 C5 A:PG4403 3.3 48.8 1.0 H21 A:PG4403 3.3 56.0 1.0 HO1 A:PG4403 3.4 66.3 1.0 H31 A:PG4403 3.6 56.2 1.0 H61 A:PG4403 3.7 54.3 1.0 H51 A:PG4403 3.8 58.6 1.0 H71 A:PG4403 3.9 52.8 1.0 H81 A:PG4403 3.9 56.5 1.0 HA A:GLU264 4.0 45.3 1.0 H12 A:PG4403 4.0 62.1 1.0 H82 A:PG4403 4.0 56.5 1.0 HA D:GLU264 4.0 45.4 1.0 H52 A:PG4403 4.0 58.6 1.0 H41 A:PG4403 4.0 60.8 1.0 H22 A:PG4403 4.0 56.0 1.0 H62 A:PG4403 4.1 54.3 1.0 H32 A:PG4403 4.1 56.2 1.0 CG A:GLU264 4.2 52.9 1.0 CG D:GLU264 4.3 51.3 1.0 HG3 A:GLU264 4.5 63.5 1.0 HG2 D:GLU264 4.6 61.6 1.0 HG2 A:GLU264 4.7 63.5 1.0 HG3 D:GLU264 4.7 61.6 1.0 CA A:GLU264 4.8 37.8 1.0 CA D:GLU264 4.9 37.8 1.0 CB A:GLU264 4.9 46.5 1.0 CB D:GLU264 5.0 42.6 1.0

Calcium binding site 2 out of 2 in the Structure of A Thioredoxin Reductase From Gloeobacter Violaceus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A Thioredoxin Reductase From Gloeobacter Violaceus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:40.6 occ:1.00 H32 B:PG4501 2.1 49.9 1.0 OE2 B:GLU264 2.3 66.2 1.0 OE1 B:GLU264 2.5 55.1 1.0 H52 B:PG4501 2.5 58.3 1.0 O3 B:PG4501 2.5 49.1 1.0 O1 B:PG4501 2.6 47.1 1.0 O4 B:PG4501 2.6 45.6 1.0 O5 B:PG4501 2.7 59.9 1.0 CD B:GLU264 2.7 57.4 1.0 C3 B:PG4501 2.8 41.6 1.0 C5 B:PG4501 2.8 48.6 1.0 H11 B:PG4501 2.9 60.4 1.0 H72 B:PG4501 3.0 57.7 1.0 O2 B:PG4501 3.1 47.8 1.0 C1 B:PG4501 3.1 50.3 1.0 C4 B:PG4501 3.1 44.1 1.0 C7 B:PG4501 3.2 48.1 1.0 C6 B:PG4501 3.2 46.2 1.0 HO1 B:PG4501 3.3 56.6 1.0 HO5 B:PG4501 3.4 71.9 1.0 C8 B:PG4501 3.4 52.1 1.0 C2 B:PG4501 3.5 49.9 1.0 H22 B:PG4501 3.5 59.8 1.0 H31 B:PG4501 3.6 49.9 1.0 H62 B:PG4501 3.6 55.4 1.0 H41 B:PG4501 3.7 52.9 1.0 H51 B:PG4501 3.7 58.3 1.0 H82 B:PG4501 3.9 62.6 1.0 H42 B:PG4501 3.9 52.9 1.0 HA B:GLU264 4.0 42.3 1.0 H61 B:PG4501 4.0 55.4 1.0 H12 B:PG4501 4.0 60.4 1.0 H71 B:PG4501 4.1 57.7 1.0 CG B:GLU264 4.2 52.4 1.0 H81 B:PG4501 4.2 62.6 1.0 H21 B:PG4501 4.4 59.8 1.0 HG2 B:GLU264 4.4 62.9 1.0 HG3 B:GLU264 4.7 62.9 1.0 CA B:GLU264 4.8 35.2 1.0 CB B:GLU264 4.9 42.8 1.0 O B:HOH667 4.9 45.1 1.0

R.M.Buey, S.Galindo-Trigo, L.Lopez-Maury, A.Velazquez-Campoy, J.L.Revuelta, F.J.Florencio, J.M.De Pereda, P.Schurmann, B.B.Buchanan, M.Balsera. A New Member of the Thioredoxin Reductase Family From Early Oxygenic Photosynthetic Organisms. Mol Plant V. 10 212 2017.
ISSN: ESSN 1752-9867
PubMed: 27418374
DOI: 10.1016/J.MOLP.2016.06.019