Calcium in PDB 5joj: Calcium-Loaded Ef-Hand Domain of L-Plastin

The binding sites of Calcium atom in the Calcium-Loaded Ef-Hand Domain of L-Plastin (pdb code 5joj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Calcium-Loaded Ef-Hand Domain of L-Plastin, PDB code: 5joj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Calcium-Loaded Ef-Hand Domain of L-Plastin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Loaded Ef-Hand Domain of L-Plastin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca101 b:0.0 occ:1.00 HA A:ASP22 2.8 0.0 1.0 OD2 A:ASP24 3.1 0.0 1.0 OE2 A:GLU33 3.1 0.0 1.0 OE1 A:GLU33 3.1 0.0 1.0 OD2 A:ASP22 3.1 0.0 1.0 OD1 A:ASN26 3.1 0.0 1.0 O A:TYR28 3.1 0.0 1.0 HD21 A:ASN26 3.3 0.0 1.0 CD A:GLU33 3.3 0.0 1.0 CG A:ASN26 3.7 0.0 1.0 ND2 A:ASN26 3.7 0.0 1.0 H A:THR23 3.8 0.0 1.0 CA A:ASP22 3.9 0.0 1.0 CG A:ASP22 3.9 0.0 1.0 H A:ASP24 3.9 0.0 1.0 H A:ASN26 4.1 0.0 1.0 CG A:ASP24 4.1 0.0 1.0 H A:TYR28 4.1 0.0 1.0 HA A:ILE29 4.2 0.0 1.0 C A:TYR28 4.3 0.0 1.0 HG21 A:THR23 4.3 0.0 1.0 CB A:ASP22 4.4 0.0 1.0 O A:VAL21 4.4 0.0 1.0 N A:THR23 4.4 0.0 1.0 HG3 A:GLU33 4.5 0.0 1.0 CG A:GLU33 4.5 0.0 1.0 H A:GLY25 4.6 0.0 1.0 HD22 A:ASN26 4.6 0.0 1.0 OD1 A:ASP24 4.6 0.0 1.0 C A:ASP22 4.6 0.0 1.0 HB3 A:ASP22 4.7 0.0 1.0 N A:ASP22 4.7 0.0 1.0 OD1 A:ASP22 4.7 0.0 1.0 HB2 A:TYR28 4.9 0.0 1.0 C A:VAL21 4.9 0.0 1.0 N A:ASP24 4.9 0.0 1.0 HG12 A:ILE29 4.9 0.0 1.0 H A:GLY27 4.9 0.0 1.0 H A:SER30 4.9 0.0 1.0 HH12 A:ARG68 4.9 0.0 1.0 N A:TYR28 4.9 0.0 1.0 CB A:ASN26 4.9 0.0 1.0 HG2 A:GLU33 5.0 0.0 1.0 HG22 A:VAL21 5.0 0.0 1.0 N A:ASN26 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Calcium-Loaded Ef-Hand Domain of L-Plastin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Loaded Ef-Hand Domain of L-Plastin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca102 b:0.0 occ:1.00 HB2 A:ASP64 2.8 0.0 1.0 OD2 A:ASP66 3.1 0.0 1.0 O A:ARG68 3.1 0.0 1.0 OE2 A:GLU73 3.1 0.0 1.0 OE1 A:GLU73 3.1 0.0 1.0 OD2 A:ASP64 3.1 0.0 1.0 OD1 A:ASP62 3.1 0.0 1.0 CD A:GLU73 3.4 0.0 1.0 HE1 A:TYR28 3.6 0.0 1.0 H A:ASP64 3.7 0.0 1.0 CG A:ASP66 3.7 0.0 1.0 CB A:ASP64 3.7 0.0 1.0 CG A:ASP64 3.8 0.0 1.0 CG A:ASP62 3.9 0.0 1.0 H A:ASP66 4.1 0.0 1.0 HB3 A:ASP66 4.1 0.0 1.0 OD2 A:ASP62 4.2 0.0 1.0 OD1 A:ASP66 4.2 0.0 1.0 HA A:ILE69 4.3 0.0 1.0 C A:ARG68 4.3 0.0 1.0 H A:ARG68 4.3 0.0 1.0 HB3 A:ASP64 4.4 0.0 1.0 N A:ASP64 4.4 0.0 1.0 HA A:ASP62 4.5 0.0 1.0 H A:LEU63 4.5 0.0 1.0 CB A:ASP66 4.5 0.0 1.0 H A:GLN65 4.5 0.0 1.0 HB2 A:ARG68 4.5 0.0 1.0 H A:SER70 4.6 0.0 1.0 CE1 A:TYR28 4.6 0.0 1.0 CA A:ASP64 4.6 0.0 1.0 HB2 A:SER70 4.8 0.0 1.0 CG A:GLU73 4.8 0.0 1.0 N A:ASP66 4.9 0.0 1.0 N A:GLN65 5.0 0.0 1.0

H.Ishida, K.V.Jensen, A.G.Woodman, M.E.Hyndman, H.J.Vogel. The Calcium-Dependent Switch Helix of L-Plastin Regulates Actin Bundling. Sci Rep V. 7 40662 2017.
ISSN: ESSN 2045-2322
PubMed: 28145401
DOI: 10.1038/SREP40662