Calcium in PDB 5kia: Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis

Enzymatic activity of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis:
1.1.1.103;

Protein crystallography data

The structure of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis, PDB code: 5kia was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.96 / 2.10
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 91.770, 91.770, 173.650, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.6

Other elements in 5kia:

The structure of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis (pdb code 5kia). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis, PDB code: 5kia:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5kia

Go back to Calcium Binding Sites List in 5kia
Calcium binding site 1 out of 2 in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:45.2
occ:1.00
O A:HOH520 2.4 36.6 1.0
OE2 A:GLU290 2.4 36.7 1.0
O A:ASP148 2.5 23.6 1.0
OE1 A:GLU290 2.7 29.4 1.0
OD1 A:ASN152 2.7 47.1 1.0
CD A:GLU290 2.9 39.7 1.0
ND2 A:ASN152 2.9 50.2 1.0
OD1 A:ASP148 2.9 62.7 1.0
OD2 A:ASP148 3.0 58.1 1.0
CG A:ASP148 3.0 54.8 1.0
CG A:ASN152 3.0 37.8 1.0
C A:ASP148 3.3 27.5 1.0
CA A:ASP148 3.8 34.1 1.0
CB A:ASP148 4.0 35.1 1.0
N A:ASN152 4.0 26.1 1.0
O A:GLY288 4.1 52.9 1.0
CB A:ASN152 4.3 28.0 1.0
N A:PRO149 4.3 27.8 1.0
CG A:GLU290 4.4 30.5 1.0
CA A:ASN152 4.6 30.8 1.0
C A:GLY151 4.7 25.1 1.0
CA A:PRO149 4.7 24.6 1.0
O A:HOH602 4.8 55.0 1.0
CA A:GLY151 4.8 20.2 1.0
O A:HOH528 4.8 29.0 1.0
N A:GLU290 5.0 37.8 1.0

Calcium binding site 2 out of 2 in 5kia

Go back to Calcium Binding Sites List in 5kia
Calcium binding site 2 out of 2 in the Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:66.3
occ:1.00
O A:HOH644 2.4 66.5 1.0
OD1 A:ASP234 2.6 25.8 1.0
OD2 A:ASP234 2.7 26.7 1.0
O A:HOH586 2.8 49.9 1.0
O A:HOH507 2.9 46.8 1.0
CG A:ASP234 3.0 24.7 1.0
O A:HOH502 3.5 54.1 1.0
O A:HOH588 4.0 42.6 0.6
ND2 A:ASN254 4.1 42.1 1.0
OD2 A:ASP166 4.1 30.2 1.0
CB A:ASP234 4.5 20.1 1.0
OE1 A:GLU165 4.6 40.5 1.0
CG A:ASP166 4.8 25.7 1.0
N A:ASP166 4.9 19.8 1.0
O A:HOH588 4.9 42.6 0.4
O A:GLY232 5.0 28.1 1.0

Reference:

J.Abendroth, C.M.Lukacs, D.D.Lorimer, T.E.Edwards. Crystal Structure of L-Threonine 3-Dehydrogenase From Burkholderia Thailandensis To Be Published.
Page generated: Sat Dec 12 05:33:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy