Calcium in PDB 5kis: Yenb/RHS2 Complex
Protein crystallography data
The structure of Yenb/RHS2 Complex, PDB code: 5kis
was solved by
J.N.Busby,
M.R.H.Hurst,
J.S.Lott,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.51 /
2.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
148.607,
132.765,
155.361,
90.00,
103.85,
90.00
|
R / Rfree (%)
|
21.6 /
26
|
Other elements in 5kis:
The structure of Yenb/RHS2 Complex also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Yenb/RHS2 Complex
(pdb code 5kis). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Yenb/RHS2 Complex, PDB code: 5kis:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 5kis
Go back to
Calcium Binding Sites List in 5kis
Calcium binding site 1 out
of 2 in the Yenb/RHS2 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Yenb/RHS2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1501
b:48.4
occ:1.00
|
OD1
|
A:ASP625
|
2.2
|
67.1
|
1.0
|
O
|
A:THR629
|
2.4
|
43.3
|
1.0
|
OG
|
A:SER627
|
2.5
|
46.3
|
1.0
|
OD2
|
A:ASP631
|
2.6
|
41.3
|
1.0
|
OD1
|
A:ASP623
|
2.6
|
55.0
|
1.0
|
OD1
|
A:ASP631
|
2.7
|
47.7
|
1.0
|
OG1
|
A:THR629
|
2.7
|
44.6
|
1.0
|
CG
|
A:ASP631
|
3.0
|
44.7
|
1.0
|
CG
|
A:ASP625
|
3.3
|
67.0
|
1.0
|
C
|
A:THR629
|
3.5
|
42.1
|
1.0
|
CG
|
A:ASP623
|
3.7
|
52.1
|
1.0
|
CB
|
A:SER627
|
3.7
|
45.2
|
1.0
|
OD2
|
A:ASP625
|
3.8
|
67.8
|
1.0
|
CB
|
A:THR629
|
3.9
|
43.6
|
1.0
|
N
|
A:THR629
|
3.9
|
39.7
|
1.0
|
CA
|
A:THR629
|
4.0
|
41.6
|
1.0
|
O
|
A:ASN645
|
4.2
|
42.7
|
1.0
|
N
|
A:SER627
|
4.2
|
46.8
|
1.0
|
N
|
A:ASP625
|
4.3
|
62.0
|
1.0
|
CA
|
A:ASP623
|
4.4
|
49.0
|
1.0
|
CB
|
A:ASP631
|
4.5
|
44.7
|
1.0
|
CA
|
A:SER627
|
4.5
|
44.6
|
1.0
|
CB
|
A:ASP625
|
4.5
|
65.3
|
1.0
|
OD2
|
A:ASP623
|
4.6
|
53.0
|
1.0
|
N
|
A:ILE624
|
4.6
|
56.6
|
1.0
|
CB
|
A:ASP623
|
4.6
|
50.6
|
1.0
|
CD2
|
A:LEU644
|
4.6
|
45.0
|
1.0
|
N
|
A:ASN630
|
4.6
|
42.0
|
1.0
|
N
|
A:ASP631
|
4.6
|
40.8
|
1.0
|
N
|
A:ASN645
|
4.7
|
40.1
|
1.0
|
CB
|
A:ASN645
|
4.7
|
40.1
|
1.0
|
C
|
A:ASN630
|
4.7
|
41.0
|
1.0
|
CA
|
A:ASP625
|
4.8
|
61.7
|
1.0
|
C
|
A:ASP623
|
4.8
|
53.1
|
1.0
|
N
|
A:GLY626
|
4.8
|
53.1
|
1.0
|
N
|
A:GLY628
|
4.8
|
40.3
|
1.0
|
C
|
A:ASP625
|
4.9
|
58.2
|
1.0
|
CA
|
A:ASN630
|
4.9
|
42.2
|
1.0
|
C
|
A:SER627
|
5.0
|
42.5
|
1.0
|
CA
|
A:ASP631
|
5.0
|
42.4
|
1.0
|
|
Calcium binding site 2 out
of 2 in 5kis
Go back to
Calcium Binding Sites List in 5kis
Calcium binding site 2 out
of 2 in the Yenb/RHS2 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Yenb/RHS2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1506
b:50.2
occ:1.00
|
O
|
B:THR9
|
2.3
|
45.2
|
1.0
|
OD1
|
A:ASP1480
|
2.4
|
68.1
|
1.0
|
OG1
|
B:THR9
|
2.6
|
44.5
|
1.0
|
CG
|
A:ASP1480
|
3.2
|
62.6
|
1.0
|
OD2
|
A:ASP1480
|
3.3
|
63.0
|
1.0
|
C
|
B:THR9
|
3.4
|
47.8
|
1.0
|
CB
|
B:THR9
|
3.4
|
47.2
|
1.0
|
O
|
B:SER370
|
3.5
|
41.1
|
1.0
|
OH
|
B:TYR372
|
3.7
|
48.6
|
1.0
|
CA
|
B:THR9
|
4.1
|
49.0
|
1.0
|
CZ
|
B:TYR372
|
4.4
|
49.2
|
1.0
|
O
|
B:PHE6
|
4.5
|
67.2
|
1.0
|
CB
|
B:SER370
|
4.5
|
38.3
|
1.0
|
C
|
B:SER370
|
4.5
|
39.9
|
1.0
|
N
|
B:PRO10
|
4.5
|
46.0
|
1.0
|
OD1
|
A:ASP1477
|
4.6
|
41.7
|
1.0
|
CB
|
A:ASP1480
|
4.7
|
58.3
|
1.0
|
CG2
|
B:THR9
|
4.7
|
48.5
|
1.0
|
CA
|
B:PRO10
|
4.8
|
45.0
|
1.0
|
OD2
|
A:ASP1477
|
4.9
|
48.0
|
1.0
|
CA
|
B:SER370
|
4.9
|
39.4
|
1.0
|
N
|
B:THR9
|
4.9
|
51.4
|
1.0
|
CB
|
B:PHE6
|
5.0
|
70.2
|
1.0
|
CE1
|
B:TYR372
|
5.0
|
48.5
|
1.0
|
|
Reference:
J.N.Busby,
M.R.H.Hurst,
J.S.Lott.
Structure of A New Bc Complex From Yersinia Entomophaga To Be Published.
Page generated: Sat Dec 12 05:33:40 2020
|