Atomistry » Calcium » PDB 5kls-5l0u » 5l0n
Atomistry »
  Calcium »
    PDB 5kls-5l0u »
      5l0n »

Calcium in PDB 5l0n: Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp

Enzymatic activity of Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp

All present enzymatic activity of Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp:
2.7.11.12;

Protein crystallography data

The structure of Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp, PDB code: 5l0n was solved by J.C.Campbell, B.Sankaran, C.W.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.58 / 1.29
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.889, 54.305, 56.450, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 18.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp (pdb code 5l0n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp, PDB code: 5l0n:

Calcium binding site 1 out of 1 in 5l0n

Go back to Calcium Binding Sites List in 5l0n
Calcium binding site 1 out of 1 in the Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pkg I'S Carboxyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with Rp-Cgmp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca405

b:63.0
occ:1.00
 O A:HOH616 3.1 19.7 1.0
HB3 A:GLU229 3.5 21.1 1.0
HA A:PHE230 3.8 13.6 1.0
HB2 A:GLU229 3.8 21.1 1.0
CD1 A:PHE230 3.8 13.7 1.0
CE1 A:PHE230 3.9 15.6 1.0
HD1 A:PHE230 4.0 16.4 1.0
HE1 A:PHE230 4.0 18.7 1.0
CB A:GLU229 4.1 17.6 1.0
CG A:PHE230 4.2 11.8 1.0
CZ A:PHE230 4.2 17.2 1.0
N A:PHE230 4.2 10.2 1.0
C A:GLU229 4.3 13.4 1.0
CA A:PHE230 4.4 11.3 1.0
H A:PHE230 4.4 12.2 1.0
O A:GLU229 4.5 14.0 1.0
CD2 A:PHE230 4.5 14.3 1.0
CE2 A:PHE230 4.5 18.8 1.0
HZ A:PHE230 4.6 20.7 1.0
OE1 A:GLU229 4.7 49.8 1.0
HG A:SER233 4.8 16.5 1.0
CA A:GLU229 4.9 13.0 1.0
OG A:SER233 4.9 13.7 1.0
CB A:PHE230 4.9 11.3 1.0
O A:GLU226 5.0 15.5 1.0

Reference:

J.C.Campbell, B.Sankaran, C.W.Kim. Structure of Pkg I Cnb-B Bound to Rp-Cgmp To Be Published.
Page generated: Mon Jul 15 07:10:43 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy