Calcium in PDB 5lgo: Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15

Enzymatic activity of Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15

All present enzymatic activity of Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15:
3.4.21.4;

Protein crystallography data

The structure of Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15, PDB code: 5lgo was solved by N.Schiering, A.D'arcy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.66 / 1.12
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.232, 55.232, 106.981, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 19.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15 (pdb code 5lgo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15, PDB code: 5lgo:

Calcium binding site 1 out of 1 in 5lgo

Go back to Calcium Binding Sites List in 5lgo
Calcium binding site 1 out of 1 in the Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Trypsin Inhibitors For the Treatment of Pancreatitis - Cpd 15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:0.3
occ:1.00
OE1 A:GLU70 2.4 15.0 1.0
OE2 A:GLU80 2.5 12.1 1.0
O A:VAL75 2.9 11.8 1.0
O A:ASN72 2.9 8.1 1.0
OE1 A:GLU77 3.0 18.2 1.0
N A:ASP71 3.2 7.4 1.0
CD A:GLU80 3.5 11.9 1.0
CD A:GLU70 3.6 12.8 1.0
O A:HOH489 3.6 20.1 1.0
CA A:GLU70 3.6 7.5 1.0
N A:ASN72 3.7 7.9 1.0
C A:ASN72 3.7 6.9 1.0
CG A:GLU80 3.8 11.8 1.0
C A:GLU70 3.9 8.3 1.0
CD A:GLU77 4.0 16.4 1.0
O A:HOH510 4.0 18.1 1.0
CB A:GLU70 4.1 8.8 1.0
CG A:GLU77 4.1 13.4 1.0
C A:VAL75 4.1 10.3 1.0
C A:ASP71 4.1 8.4 1.0
CA A:ASP71 4.2 8.4 1.0
N A:GLU77 4.3 10.7 1.0
CA A:ASN72 4.3 8.1 1.0
CG A:GLU70 4.3 11.9 1.0
CB A:GLU77 4.3 11.4 1.0
OE2 A:GLU70 4.4 19.7 1.0
O A:GLY69 4.6 9.4 1.0
N A:ILE73 4.6 7.5 1.0
OE1 A:GLU80 4.7 11.2 1.0
CB A:ASP71 4.8 10.7 1.0
CA A:VAL76 4.8 10.0 1.0
N A:GLU70 4.8 7.3 1.0
CA A:ILE73 4.9 7.5 1.0
N A:VAL76 4.9 9.6 1.0
CB A:ASN72 4.9 8.7 1.0
CA A:GLU77 5.0 11.1 1.0

Reference:

T.Brandl, O.Simic, P.R.Skaanderup, K.Namoto, F.Berst, C.Ehrhardt, N.Schiering, I.Mueller, J.Woelcke. Trypsin Inhibitors For the Treatment of Pancreatitis. Bioorg.Med.Chem.Lett. V. 26 4340 2016.
ISSN: ESSN 1464-3405
PubMed: 27476144
DOI: 10.1016/J.BMCL.2016.07.029
Page generated: Sat Dec 12 05:36:01 2020

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