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Calcium in PDB 5lqq: Structure of Autotaxin (ENPP2) with LM350

Enzymatic activity of Structure of Autotaxin (ENPP2) with LM350

All present enzymatic activity of Structure of Autotaxin (ENPP2) with LM350:
3.1.4.39;

Protein crystallography data

The structure of Structure of Autotaxin (ENPP2) with LM350, PDB code: 5lqq was solved by W.J.Keune, T.Heidebrecht, E.Castelmur, R.P.Joosten, A.Perrakis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.00 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 62.655, 89.067, 77.509, 90.00, 102.88, 90.00
R / Rfree (%) 21.7 / 26.2

Other elements in 5lqq:

The structure of Structure of Autotaxin (ENPP2) with LM350 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iodine (I) 10 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Autotaxin (ENPP2) with LM350 (pdb code 5lqq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Autotaxin (ENPP2) with LM350, PDB code: 5lqq:

Calcium binding site 1 out of 1 in 5lqq

Go back to Calcium Binding Sites List in 5lqq
Calcium binding site 1 out of 1 in the Structure of Autotaxin (ENPP2) with LM350


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Autotaxin (ENPP2) with LM350 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca911

b:47.4
occ:1.00
OD1 A:ASP747 2.3 51.8 1.0
O A:HOH1037 2.3 39.4 1.0
OD1 A:ASP739 2.4 43.7 1.0
O A:LEU745 2.4 45.9 1.0
OD1 A:ASN741 2.5 46.6 1.0
OD1 A:ASP743 2.5 45.3 1.0
CG A:ASP743 3.3 45.3 1.0
CG A:ASP747 3.5 52.3 1.0
CG A:ASN741 3.5 47.3 1.0
CG A:ASP739 3.5 43.9 1.0
C A:LEU745 3.5 46.1 1.0
OD2 A:ASP743 3.6 45.8 1.0
ND2 A:ASN741 3.9 48.1 1.0
N A:ASP747 3.9 51.1 1.0
CA A:ASP739 4.0 45.4 1.0
C A:ARG746 4.1 50.1 1.0
N A:LEU745 4.1 43.7 1.0
CA A:ASP747 4.1 52.3 1.0
CB A:ASP739 4.2 44.5 1.0
CA A:LEU745 4.2 44.7 1.0
O A:ARG746 4.3 50.2 1.0
OD2 A:ASP747 4.3 52.7 1.0
CB A:ASP747 4.4 52.9 1.0
O A:PHE738 4.4 45.7 1.0
N A:ASP743 4.4 44.6 1.0
CB A:LEU745 4.5 44.8 1.0
OD2 A:ASP739 4.5 43.2 1.0
N A:ARG746 4.5 47.5 1.0
C A:ASP739 4.6 45.9 1.0
CB A:ASP743 4.6 44.4 1.0
OE2 A:GLU751 4.6 63.7 1.0
N A:ASN741 4.7 47.4 1.0
CA A:ARG746 4.7 49.1 1.0
CB A:ASN741 4.8 47.6 1.0
N A:TYR742 4.8 46.0 1.0
N A:TYR740 4.8 47.0 1.0
CA A:ASP743 4.9 43.8 1.0
C A:ASN741 4.9 46.4 1.0
N A:GLY744 4.9 43.1 1.0

Reference:

L.M.Miller, W.J.Keune, D.Castagna, L.C.Young, E.L.Duffy, F.Potjewyd, F.Salgado-Polo, P.Engel Garcia, D.Semaan, J.M.Pritchard, A.Perrakis, S.J.Macdonald, C.Jamieson, A.J.Watson. Structure-Activity Relationships of Small Molecule Autotaxin Inhibitors with A Discrete Binding Mode. J. Med. Chem. V. 60 722 2017.
ISSN: ISSN 1520-4804
PubMed: 27982588
DOI: 10.1021/ACS.JMEDCHEM.6B01597
Page generated: Sat Dec 12 05:36:21 2020

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