Calcium in PDB 5lsf: Sacbrood Honeybee Virus

The structure of Sacbrood Honeybee Virus, PDB code: 5lsf was solved by P.Plevka, M.Veselikova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.10
Space group	C 1 2 1 2
Cell size a, b, c (Å), α, β, γ (°)	487.850, 360.970, 338.160, 90.00, 133.07, 90.00
R / Rfree (%)	19.4 / n/a

The binding sites of Calcium atom in the Sacbrood Honeybee Virus (pdb code 5lsf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Sacbrood Honeybee Virus, PDB code: 5lsf:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Sacbrood Honeybee Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Sacbrood Honeybee Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:56.3 occ:1.00 O A:HOH508 3.0 43.0 1.0 N A:ASN14 3.7 21.5 1.0 O A:ASN14 3.9 22.0 1.0 CA A:ALA13 4.1 19.8 1.0 C A:ALA13 4.4 21.1 1.0 CB A:ALA13 4.5 17.1 1.0 CA A:ASN14 4.6 22.1 1.0 C A:ASN14 4.6 22.0 1.0 CB A:ASN14 4.8 23.3 1.0

Calcium binding site 2 out of 2 in the Sacbrood Honeybee Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Sacbrood Honeybee Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:66.3 occ:1.00 O B:HOH488 4.6 40.1 1.0

M.Prochazkova, T.Fuzik, K.Skubnik, J.Moravcova, Z.Ubiparip, A.Pridal, P.Plevka. Virion Structure and Genome Delivery Mechanism of Sacbrood Honeybee Virus. Proc. Natl. Acad. Sci. V. 115 7759 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29987012
DOI: 10.1073/PNAS.1722018115