Calcium in PDB 5m86: Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
Protein crystallography data
The structure of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207, PDB code: 5m86
was solved by
G.R.Pathare,
I.Nagy,
A.Bracher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.66 /
2.40
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
228.639,
112.821,
221.328,
90.00,
118.70,
90.00
|
|
R / Rfree (%)
|
17.7 /
20.3
|
Other elements in 5m86:
The structure of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
(pdb code 5m86). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Crystal Structure of the Thermoplasma Acidophilum Protein TA1207, PDB code: 5m86:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 1 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:60.0
occ:1.00
|
OD2
|
A:ASP219
|
2.4
|
49.5
|
1.0
|
|
OG1
|
A:THR221
|
2.5
|
47.9
|
1.0
|
|
OD1
|
A:ASP219
|
2.5
|
50.0
|
1.0
|
|
HD22
|
J:ASN247
|
2.6
|
82.8
|
1.0
|
|
CG
|
A:ASP219
|
2.7
|
48.3
|
1.0
|
|
HD21
|
J:ASN247
|
3.1
|
82.8
|
1.0
|
|
ND2
|
J:ASN247
|
3.1
|
69.0
|
1.0
|
|
O
|
A:HOH518
|
3.3
|
61.9
|
1.0
|
|
HB
|
A:THR221
|
3.4
|
59.1
|
1.0
|
|
CB
|
A:THR221
|
3.5
|
49.3
|
1.0
|
|
OD2
|
J:ASP220
|
3.9
|
52.2
|
1.0
|
|
H
|
A:THR221
|
4.0
|
54.4
|
1.0
|
|
HG21
|
A:THR221
|
4.0
|
62.0
|
1.0
|
|
CB
|
A:ASP219
|
4.1
|
45.1
|
1.0
|
|
HA
|
J:ASN247
|
4.2
|
67.9
|
1.0
|
|
CG
|
J:ASN247
|
4.2
|
67.3
|
1.0
|
|
HB3
|
A:ASP219
|
4.3
|
54.1
|
1.0
|
|
HD22
|
A:ASN247
|
4.3
|
56.3
|
1.0
|
|
HD21
|
A:ASN196
|
4.3
|
90.0
|
1.0
|
|
CG2
|
A:THR221
|
4.3
|
51.6
|
1.0
|
|
OD1
|
J:ASP220
|
4.3
|
50.3
|
1.0
|
|
HB3
|
J:ASN247
|
4.5
|
72.9
|
1.0
|
|
HB2
|
A:ASP219
|
4.5
|
54.1
|
1.0
|
|
CG
|
J:ASP220
|
4.5
|
50.5
|
1.0
|
|
N
|
A:THR221
|
4.6
|
45.4
|
1.0
|
|
CA
|
A:THR221
|
4.7
|
49.5
|
1.0
|
|
ND2
|
A:ASN196
|
4.7
|
75.0
|
1.0
|
|
HG23
|
A:THR221
|
4.7
|
62.0
|
1.0
|
|
CB
|
J:ASN247
|
4.8
|
60.8
|
1.0
|
|
HD22
|
A:ASN196
|
4.8
|
90.0
|
1.0
|
|
HE2
|
J:LYS244
|
4.8
|
77.5
|
1.0
|
|
HD21
|
A:ASN247
|
4.9
|
56.3
|
1.0
|
|
ND2
|
A:ASN247
|
4.9
|
47.0
|
1.0
|
|
O
|
J:HOH502
|
4.9
|
48.3
|
1.0
|
|
CA
|
J:ASN247
|
5.0
|
56.6
|
1.0
|
|
Calcium binding site 2 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 2 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:59.3
occ:1.00
|
OG1
|
B:THR221
|
2.3
|
54.9
|
1.0
|
|
O
|
B:HOH511
|
2.4
|
47.8
|
1.0
|
|
O
|
B:HOH569
|
2.4
|
65.0
|
1.0
|
|
OD1
|
B:ASP219
|
2.4
|
50.6
|
1.0
|
|
OD2
|
B:ASP219
|
2.5
|
51.5
|
1.0
|
|
OD1
|
I:ASP220
|
2.7
|
60.9
|
1.0
|
|
CG
|
B:ASP219
|
2.8
|
49.7
|
1.0
|
|
OD2
|
I:ASP220
|
3.1
|
60.5
|
1.0
|
|
CG
|
I:ASP220
|
3.2
|
59.8
|
1.0
|
|
CB
|
B:THR221
|
3.5
|
55.7
|
1.0
|
|
HB
|
B:THR221
|
3.5
|
66.8
|
1.0
|
|
H
|
B:THR221
|
3.7
|
67.7
|
1.0
|
|
HD22
|
B:ASN247
|
3.8
|
89.0
|
1.0
|
|
O
|
B:HOH520
|
3.8
|
40.4
|
1.0
|
|
HG21
|
B:THR221
|
4.3
|
67.3
|
1.0
|
|
HB2
|
I:ASN247
|
4.3
|
76.2
|
1.0
|
|
CB
|
B:ASP219
|
4.3
|
48.8
|
1.0
|
|
O
|
I:HOH501
|
4.3
|
67.1
|
1.0
|
|
N
|
B:THR221
|
4.4
|
56.4
|
1.0
|
|
CG2
|
B:THR221
|
4.5
|
56.1
|
1.0
|
|
ND2
|
B:ASN247
|
4.5
|
74.2
|
1.0
|
|
CA
|
B:THR221
|
4.5
|
57.2
|
1.0
|
|
HD21
|
B:ASN247
|
4.6
|
89.0
|
1.0
|
|
HB3
|
B:ASP219
|
4.6
|
58.6
|
1.0
|
|
CB
|
I:ASP220
|
4.7
|
58.1
|
1.0
|
|
HB2
|
B:ASP219
|
4.7
|
58.6
|
1.0
|
|
HG23
|
B:THR221
|
4.8
|
67.3
|
1.0
|
|
HA
|
B:THR221
|
4.8
|
68.6
|
1.0
|
|
HB2
|
I:ASP220
|
4.8
|
69.7
|
1.0
|
|
OD1
|
B:ASP220
|
4.9
|
59.4
|
1.0
|
|
HA
|
I:ASN247
|
4.9
|
71.2
|
1.0
|
|
C
|
I:ASP220
|
5.0
|
59.5
|
1.0
|
|
Calcium binding site 3 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 3 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:54.5
occ:1.00
|
OG1
|
C:THR221
|
2.4
|
55.6
|
1.0
|
|
O
|
C:HOH559
|
2.4
|
49.2
|
1.0
|
|
O
|
C:HOH513
|
2.4
|
48.8
|
1.0
|
|
O
|
H:HOH525
|
2.4
|
61.7
|
1.0
|
|
OD1
|
C:ASP219
|
2.4
|
46.5
|
1.0
|
|
OD2
|
C:ASP219
|
2.5
|
49.0
|
1.0
|
|
OD1
|
H:ASP220
|
2.6
|
59.2
|
1.0
|
|
CG
|
C:ASP219
|
2.8
|
47.2
|
1.0
|
|
OD2
|
H:ASP220
|
3.2
|
60.6
|
1.0
|
|
CG
|
H:ASP220
|
3.2
|
58.6
|
1.0
|
|
HD22
|
C:ASN247
|
3.5
|
0.6
|
1.0
|
|
CB
|
C:THR221
|
3.6
|
54.7
|
1.0
|
|
H
|
C:THR221
|
3.7
|
63.4
|
1.0
|
|
HB
|
C:THR221
|
3.7
|
65.6
|
1.0
|
|
O
|
H:HOH508
|
4.1
|
54.2
|
1.0
|
|
ND2
|
C:ASN247
|
4.3
|
83.8
|
1.0
|
|
N
|
C:THR221
|
4.3
|
52.9
|
1.0
|
|
CB
|
C:ASP219
|
4.4
|
45.1
|
1.0
|
|
HD21
|
C:ASN247
|
4.4
|
0.6
|
1.0
|
|
HB2
|
H:ASN247
|
4.5
|
71.2
|
1.0
|
|
HG21
|
C:THR221
|
4.5
|
64.5
|
1.0
|
|
CA
|
C:THR221
|
4.5
|
55.0
|
1.0
|
|
CG2
|
C:THR221
|
4.6
|
53.7
|
1.0
|
|
CB
|
H:ASP220
|
4.6
|
55.6
|
1.0
|
|
OD1
|
C:ASP220
|
4.6
|
55.0
|
1.0
|
|
HB3
|
C:ASP219
|
4.7
|
54.1
|
1.0
|
|
HB2
|
C:ASN247
|
4.7
|
91.2
|
1.0
|
|
HA
|
C:THR221
|
4.7
|
66.0
|
1.0
|
|
HB2
|
C:ASP219
|
4.8
|
54.1
|
1.0
|
|
HB2
|
H:ASP220
|
4.8
|
66.8
|
1.0
|
|
O
|
H:ASP220
|
4.8
|
57.4
|
1.0
|
|
HA
|
H:THR221
|
4.8
|
63.4
|
1.0
|
|
C
|
H:ASP220
|
4.8
|
54.0
|
1.0
|
|
HG23
|
C:THR221
|
4.9
|
64.5
|
1.0
|
|
H
|
C:ASP220
|
4.9
|
57.8
|
1.0
|
|
Calcium binding site 4 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 4 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca401
b:43.3
occ:1.00
|
OG1
|
D:THR221
|
2.3
|
44.9
|
1.0
|
|
O
|
D:HOH502
|
2.4
|
38.8
|
1.0
|
|
OD1
|
D:ASP219
|
2.4
|
41.8
|
1.0
|
|
O
|
D:HOH584
|
2.4
|
40.5
|
1.0
|
|
O
|
D:HOH604
|
2.4
|
37.6
|
1.0
|
|
OD2
|
D:ASP219
|
2.6
|
40.6
|
1.0
|
|
OD1
|
G:ASP220
|
2.6
|
49.8
|
1.0
|
|
CG
|
D:ASP219
|
2.8
|
41.2
|
1.0
|
|
OD2
|
G:ASP220
|
2.9
|
49.3
|
1.0
|
|
CG
|
G:ASP220
|
3.1
|
49.5
|
1.0
|
|
H
|
D:THR221
|
3.4
|
47.9
|
1.0
|
|
CB
|
D:THR221
|
3.5
|
43.9
|
1.0
|
|
HD22
|
D:ASN247
|
3.5
|
87.8
|
1.0
|
|
HB
|
D:THR221
|
3.5
|
52.7
|
1.0
|
|
N
|
D:THR221
|
4.1
|
39.9
|
1.0
|
|
O
|
D:HOH535
|
4.2
|
31.2
|
1.0
|
|
ND2
|
D:ASN247
|
4.3
|
73.2
|
1.0
|
|
CA
|
D:THR221
|
4.3
|
41.9
|
1.0
|
|
CB
|
D:ASP219
|
4.4
|
39.4
|
1.0
|
|
OD1
|
D:ASP220
|
4.4
|
44.6
|
1.0
|
|
HG21
|
D:THR221
|
4.5
|
52.6
|
1.0
|
|
CB
|
G:ASP220
|
4.5
|
48.2
|
1.0
|
|
HD21
|
D:ASN247
|
4.5
|
87.8
|
1.0
|
|
HA
|
D:THR221
|
4.5
|
50.2
|
1.0
|
|
CG2
|
D:THR221
|
4.5
|
43.9
|
1.0
|
|
HB2
|
D:ASN247
|
4.6
|
76.2
|
1.0
|
|
HB2
|
G:ASP220
|
4.7
|
57.8
|
1.0
|
|
HB3
|
D:ASP219
|
4.7
|
47.3
|
1.0
|
|
H
|
D:ASP220
|
4.7
|
43.1
|
1.0
|
|
HB2
|
D:ASP219
|
4.8
|
47.3
|
1.0
|
|
HG23
|
D:THR221
|
4.8
|
52.6
|
1.0
|
|
N
|
D:ASP220
|
4.9
|
36.0
|
1.0
|
|
HA
|
G:ASN247
|
4.9
|
59.5
|
1.0
|
|
HZ3
|
G:LYS244
|
5.0
|
88.7
|
1.0
|
|
C
|
G:ASP220
|
5.0
|
48.3
|
1.0
|
|
Calcium binding site 5 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 5 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca401
b:66.3
occ:1.00
|
O
|
F:HOH560
|
2.3
|
79.2
|
1.0
|
|
OG1
|
E:THR221
|
2.4
|
55.9
|
1.0
|
|
OD2
|
E:ASP219
|
2.4
|
54.2
|
1.0
|
|
OD1
|
E:ASP219
|
2.4
|
59.1
|
1.0
|
|
CG
|
E:ASP219
|
2.7
|
55.4
|
1.0
|
|
O
|
E:HOH569
|
3.0
|
48.0
|
1.0
|
|
HB
|
E:THR221
|
3.5
|
70.9
|
1.0
|
|
CB
|
E:THR221
|
3.5
|
59.1
|
1.0
|
|
OD2
|
F:ASP220
|
3.6
|
55.8
|
1.0
|
|
H
|
E:THR221
|
3.9
|
72.1
|
1.0
|
|
OD1
|
F:ASP220
|
4.0
|
54.1
|
1.0
|
|
HD22
|
E:ASN247
|
4.1
|
70.2
|
1.0
|
|
HG21
|
E:THR221
|
4.1
|
70.0
|
1.0
|
|
HB2
|
F:ASN247
|
4.1
|
88.7
|
1.0
|
|
CB
|
E:ASP219
|
4.2
|
53.8
|
1.0
|
|
CG
|
F:ASP220
|
4.2
|
52.7
|
1.0
|
|
HA
|
F:ASN247
|
4.3
|
82.8
|
1.0
|
|
HB3
|
F:ASN247
|
4.4
|
88.7
|
1.0
|
|
CG2
|
E:THR221
|
4.4
|
58.3
|
1.0
|
|
HB3
|
E:ASP219
|
4.4
|
64.6
|
1.0
|
|
HB2
|
E:ASP219
|
4.5
|
64.6
|
1.0
|
|
N
|
E:THR221
|
4.5
|
60.1
|
1.0
|
|
CA
|
E:THR221
|
4.6
|
61.2
|
1.0
|
|
CB
|
F:ASN247
|
4.6
|
73.9
|
1.0
|
|
HD21
|
E:ASN247
|
4.7
|
70.2
|
1.0
|
|
ND2
|
E:ASN247
|
4.7
|
58.5
|
1.0
|
|
HG23
|
E:THR221
|
4.7
|
70.0
|
1.0
|
|
HE2
|
F:LYS244
|
4.8
|
88.5
|
1.0
|
|
HA
|
E:THR221
|
4.9
|
73.5
|
1.0
|
|
CA
|
F:ASN247
|
5.0
|
69.0
|
1.0
|
|
Calcium binding site 6 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 6 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca401
b:61.4
occ:1.00
|
OG1
|
F:THR221
|
2.3
|
55.0
|
1.0
|
|
O
|
F:HOH558
|
2.3
|
53.3
|
1.0
|
|
OD1
|
F:ASP219
|
2.4
|
49.9
|
1.0
|
|
OD2
|
F:ASP219
|
2.5
|
46.1
|
1.0
|
|
OD1
|
E:ASP220
|
2.6
|
61.8
|
1.0
|
|
CG
|
F:ASP219
|
2.8
|
45.6
|
1.0
|
|
OD2
|
E:ASP220
|
3.0
|
59.1
|
1.0
|
|
CG
|
E:ASP220
|
3.1
|
60.3
|
1.0
|
|
HD22
|
F:ASN247
|
3.4
|
92.2
|
1.0
|
|
H
|
F:THR221
|
3.5
|
60.6
|
1.0
|
|
CB
|
F:THR221
|
3.6
|
53.7
|
1.0
|
|
HB
|
F:THR221
|
3.7
|
64.5
|
1.0
|
|
HB2
|
E:ASN247
|
4.1
|
65.5
|
1.0
|
|
N
|
F:THR221
|
4.2
|
50.5
|
1.0
|
|
ND2
|
F:ASN247
|
4.2
|
76.8
|
1.0
|
|
O
|
F:HOH534
|
4.4
|
49.4
|
1.0
|
|
CA
|
F:THR221
|
4.4
|
52.6
|
1.0
|
|
CB
|
F:ASP219
|
4.4
|
42.8
|
1.0
|
|
HD21
|
F:ASN247
|
4.4
|
92.2
|
1.0
|
|
OD1
|
F:ASP220
|
4.4
|
54.1
|
1.0
|
|
HG21
|
F:THR221
|
4.5
|
65.4
|
1.0
|
|
CG2
|
F:THR221
|
4.6
|
54.5
|
1.0
|
|
CB
|
E:ASP220
|
4.6
|
59.0
|
1.0
|
|
HA
|
F:THR221
|
4.6
|
63.2
|
1.0
|
|
HB2
|
F:ASN247
|
4.6
|
88.7
|
1.0
|
|
HB3
|
F:ASP219
|
4.7
|
51.3
|
1.0
|
|
HA
|
E:ASN247
|
4.7
|
64.0
|
1.0
|
|
HB2
|
E:ASP220
|
4.8
|
70.8
|
1.0
|
|
H
|
F:ASP220
|
4.8
|
52.6
|
1.0
|
|
HB2
|
F:ASP219
|
4.8
|
51.3
|
1.0
|
|
HG23
|
F:THR221
|
4.8
|
65.4
|
1.0
|
|
CB
|
E:ASN247
|
4.8
|
54.6
|
1.0
|
|
HB3
|
E:ASN247
|
4.9
|
65.5
|
1.0
|
|
N
|
F:ASP220
|
5.0
|
43.9
|
1.0
|
|
C
|
E:ASP220
|
5.0
|
60.3
|
1.0
|
|
Calcium binding site 7 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 7 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca401
b:57.1
occ:1.00
|
O
|
G:HOH585
|
2.4
|
50.1
|
1.0
|
|
OG1
|
G:THR221
|
2.4
|
41.7
|
1.0
|
|
OD2
|
G:ASP219
|
2.4
|
42.1
|
1.0
|
|
OD1
|
G:ASP219
|
2.5
|
46.9
|
1.0
|
|
CG
|
G:ASP219
|
2.8
|
43.5
|
1.0
|
|
O
|
G:HOH588
|
3.0
|
44.3
|
1.0
|
|
O
|
G:HOH571
|
3.1
|
60.5
|
1.0
|
|
HB
|
G:THR221
|
3.5
|
74.8
|
1.0
|
|
CB
|
G:THR221
|
3.5
|
62.3
|
1.0
|
|
OD2
|
D:ASP220
|
3.6
|
48.9
|
1.0
|
|
H
|
G:THR221
|
3.8
|
58.9
|
1.0
|
|
OD1
|
D:ASP220
|
4.0
|
44.6
|
1.0
|
|
HB2
|
D:ASN247
|
4.2
|
76.2
|
1.0
|
|
HG21
|
G:THR221
|
4.2
|
77.4
|
1.0
|
|
CG
|
D:ASP220
|
4.2
|
45.0
|
1.0
|
|
HA
|
D:ASN247
|
4.2
|
62.2
|
1.0
|
|
CB
|
G:ASP219
|
4.3
|
43.9
|
1.0
|
|
HB3
|
D:ASN247
|
4.3
|
76.2
|
1.0
|
|
CG2
|
G:THR221
|
4.4
|
64.5
|
1.0
|
|
N
|
G:THR221
|
4.5
|
49.0
|
1.0
|
|
HB3
|
G:ASP219
|
4.5
|
52.6
|
1.0
|
|
O
|
D:HOH502
|
4.6
|
38.8
|
1.0
|
|
CA
|
G:THR221
|
4.6
|
57.0
|
1.0
|
|
CB
|
D:ASN247
|
4.6
|
63.5
|
1.0
|
|
HB2
|
G:ASP219
|
4.7
|
52.6
|
1.0
|
|
HG23
|
G:THR221
|
4.8
|
77.4
|
1.0
|
|
HE2
|
D:LYS244
|
4.8
|
68.4
|
1.0
|
|
HA
|
G:THR221
|
4.9
|
68.5
|
1.0
|
|
HD21
|
G:ASN247
|
4.9
|
75.1
|
1.0
|
|
CA
|
D:ASN247
|
4.9
|
51.9
|
1.0
|
|
Calcium binding site 8 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 8 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca401
b:63.8
occ:1.00
|
O
|
H:HOH540
|
2.4
|
55.5
|
1.0
|
|
OG1
|
H:THR221
|
2.4
|
51.2
|
1.0
|
|
OD2
|
H:ASP219
|
2.4
|
47.6
|
1.0
|
|
OD1
|
H:ASP219
|
2.5
|
52.8
|
1.0
|
|
CG
|
H:ASP219
|
2.7
|
49.5
|
1.0
|
|
O
|
H:HOH508
|
3.2
|
54.2
|
1.0
|
|
HB
|
H:THR221
|
3.3
|
62.5
|
1.0
|
|
CB
|
H:THR221
|
3.4
|
52.1
|
1.0
|
|
HG21
|
H:THR221
|
3.9
|
64.6
|
1.0
|
|
OD2
|
C:ASP220
|
4.0
|
55.9
|
1.0
|
|
H
|
H:THR221
|
4.0
|
63.2
|
1.0
|
|
CB
|
H:ASP219
|
4.1
|
48.7
|
1.0
|
|
HD21
|
H:ASN196
|
4.2
|
82.5
|
1.0
|
|
HB3
|
H:ASP219
|
4.2
|
58.4
|
1.0
|
|
CG2
|
H:THR221
|
4.2
|
53.8
|
1.0
|
|
HB2
|
C:ASN247
|
4.4
|
91.2
|
1.0
|
|
HB3
|
C:ASN247
|
4.4
|
91.2
|
1.0
|
|
OD1
|
C:ASP220
|
4.4
|
55.0
|
1.0
|
|
HA
|
C:ASN247
|
4.4
|
81.8
|
1.0
|
|
HD22
|
H:ASN247
|
4.5
|
71.6
|
1.0
|
|
HB2
|
H:ASP219
|
4.5
|
58.4
|
1.0
|
|
CG
|
C:ASP220
|
4.6
|
54.5
|
1.0
|
|
CA
|
H:THR221
|
4.6
|
52.8
|
1.0
|
|
N
|
H:THR221
|
4.6
|
52.7
|
1.0
|
|
HG23
|
H:THR221
|
4.7
|
64.6
|
1.0
|
|
ND2
|
H:ASN196
|
4.7
|
68.7
|
1.0
|
|
HD22
|
H:ASN196
|
4.8
|
82.5
|
1.0
|
|
CB
|
C:ASN247
|
4.8
|
76.0
|
1.0
|
|
O
|
C:HOH513
|
4.9
|
48.8
|
1.0
|
|
O
|
H:HOH503
|
4.9
|
64.3
|
1.0
|
|
Calcium binding site 9 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 9 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca401
b:75.3
occ:1.00
|
OG1
|
I:THR221
|
2.5
|
60.4
|
1.0
|
|
OD2
|
I:ASP219
|
2.5
|
54.9
|
1.0
|
|
OD1
|
I:ASP219
|
2.7
|
58.0
|
1.0
|
|
CG
|
I:ASP219
|
2.9
|
55.2
|
1.0
|
|
HG1
|
I:THR221
|
3.0
|
72.5
|
1.0
|
|
O
|
I:HOH501
|
3.2
|
67.1
|
1.0
|
|
HB
|
I:THR221
|
3.5
|
73.0
|
1.0
|
|
CB
|
I:THR221
|
3.5
|
60.8
|
1.0
|
|
OD2
|
B:ASP220
|
3.7
|
60.4
|
1.0
|
|
HG21
|
I:THR221
|
3.9
|
75.9
|
1.0
|
|
OD1
|
B:ASP220
|
4.1
|
59.4
|
1.0
|
|
HD21
|
I:ASN196
|
4.1
|
88.2
|
1.0
|
|
H
|
I:THR221
|
4.2
|
67.3
|
1.0
|
|
HB2
|
B:ASN247
|
4.2
|
81.5
|
1.0
|
|
CB
|
I:ASP219
|
4.3
|
52.8
|
1.0
|
|
CG2
|
I:THR221
|
4.3
|
63.2
|
1.0
|
|
CG
|
B:ASP220
|
4.3
|
59.5
|
1.0
|
|
HB3
|
I:ASP219
|
4.4
|
63.4
|
1.0
|
|
HA
|
B:ASN247
|
4.4
|
76.3
|
1.0
|
|
HB3
|
B:ASN247
|
4.4
|
81.5
|
1.0
|
|
HD22
|
I:ASN247
|
4.5
|
80.6
|
1.0
|
|
ND2
|
I:ASN196
|
4.6
|
73.5
|
1.0
|
|
HB2
|
I:ASP219
|
4.6
|
63.4
|
1.0
|
|
HD22
|
I:ASN196
|
4.6
|
88.2
|
1.0
|
|
HG23
|
I:THR221
|
4.7
|
75.9
|
1.0
|
|
CB
|
B:ASN247
|
4.7
|
67.9
|
1.0
|
|
CA
|
I:THR221
|
4.8
|
59.2
|
1.0
|
|
N
|
I:THR221
|
4.8
|
56.0
|
1.0
|
|
Calcium binding site 10 out
of 10 in 5m86
Go back to
Calcium Binding Sites List in 5m86
Calcium binding site 10 out
of 10 in the Crystal Structure of the Thermoplasma Acidophilum Protein TA1207
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of the Thermoplasma Acidophilum Protein TA1207 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca401
b:44.7
occ:1.00
|
O
|
J:HOH533
|
2.4
|
43.4
|
1.0
|
|
OD1
|
J:ASP219
|
2.4
|
47.5
|
1.0
|
|
O
|
J:HOH502
|
2.4
|
48.3
|
1.0
|
|
OG1
|
J:THR221
|
2.4
|
52.9
|
1.0
|
|
OD2
|
J:ASP219
|
2.5
|
44.9
|
1.0
|
|
OD1
|
A:ASP220
|
2.5
|
45.7
|
1.0
|
|
CG
|
J:ASP219
|
2.8
|
46.0
|
1.0
|
|
OD2
|
A:ASP220
|
3.0
|
43.7
|
1.0
|
|
CG
|
A:ASP220
|
3.1
|
45.2
|
1.0
|
|
H
|
J:THR221
|
3.6
|
52.6
|
1.0
|
|
CB
|
J:THR221
|
3.6
|
50.0
|
1.0
|
|
HB
|
J:THR221
|
3.7
|
60.0
|
1.0
|
|
O
|
A:HOH518
|
4.0
|
61.9
|
1.0
|
|
N
|
J:THR221
|
4.3
|
43.9
|
1.0
|
|
CB
|
J:ASP219
|
4.3
|
40.0
|
1.0
|
|
HB2
|
A:ASN247
|
4.4
|
55.4
|
1.0
|
|
HB3
|
J:ASN247
|
4.4
|
72.9
|
1.0
|
|
O
|
J:HOH522
|
4.4
|
49.6
|
1.0
|
|
CB
|
A:ASP220
|
4.5
|
44.0
|
1.0
|
|
CA
|
J:THR221
|
4.5
|
49.1
|
1.0
|
|
HG21
|
J:THR221
|
4.6
|
61.7
|
1.0
|
|
OD1
|
J:ASP220
|
4.6
|
50.3
|
1.0
|
|
HB2
|
A:ASP220
|
4.6
|
52.8
|
1.0
|
|
HB3
|
J:ASP219
|
4.7
|
48.0
|
1.0
|
|
CG2
|
J:THR221
|
4.7
|
51.4
|
1.0
|
|
HB2
|
J:ASP219
|
4.7
|
48.0
|
1.0
|
|
HA
|
J:THR221
|
4.7
|
59.0
|
1.0
|
|
O
|
A:ASP220
|
4.7
|
47.6
|
1.0
|
|
C
|
A:ASP220
|
4.8
|
44.5
|
1.0
|
|
H
|
J:ASP220
|
4.8
|
57.5
|
1.0
|
|
HA
|
A:THR221
|
4.9
|
59.4
|
1.0
|
|
HG23
|
J:THR221
|
4.9
|
61.7
|
1.0
|
|
HA
|
A:ASN247
|
5.0
|
55.1
|
1.0
|
|
Reference:
G.R.Pathare,
I.Nagy,
A.Hubert,
D.R.Thomas,
A.Bracher.
Crystal Structure of the Thermoplasma Acidophilum Protein TA1207. Acta Crystallogr F Struct V. 73 328 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28580920
DOI: 10.1107/S2053230X17007087
Page generated: Mon Jul 15 07:57:50 2024
|
