Atomistry » Calcium » PDB 5m2o-5mhp » 5m8e
Atomistry »
  Calcium »
    PDB 5m2o-5mhp »
      5m8e »

Calcium in PDB 5m8e: Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142

Enzymatic activity of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142

All present enzymatic activity of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142:
3.2.1.55;

Protein crystallography data

The structure of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142, PDB code: 5m8e was solved by J.Linares-Pasten, D.T.Logan, E.Nordberg Karlsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.70 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.880, 71.930, 79.510, 90.00, 101.93, 90.00
R / Rfree (%) 17.2 / 21.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 (pdb code 5m8e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142, PDB code: 5m8e:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5m8e

Go back to Calcium Binding Sites List in 5m8e
Calcium binding site 1 out of 2 in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:37.7
occ:1.00
OE2 A:GLU76 2.2 21.8 1.0
O A:HOH503 2.3 18.9 1.0
O A:HOH573 2.4 19.0 1.0
CE1 A:HIS264 2.9 31.6 1.0
CD A:GLU76 3.3 27.3 1.0
O A:HOH518 3.5 25.2 1.0
O A:HOH593 3.5 37.1 1.0
CG A:GLU76 3.7 22.4 1.0
ND1 A:HIS264 3.8 32.1 1.0
NE2 A:HIS264 3.8 31.7 1.0
O A:PRO202 4.1 20.9 1.0
O A:HOH511 4.1 19.6 1.0
O A:ASP139 4.2 17.2 1.0
O A:HOH506 4.2 16.8 1.0
OE1 A:GLU76 4.4 19.6 1.0
C A:ASP139 4.6 19.1 1.0
O A:ALA140 4.6 20.4 1.0
CA A:ASP139 4.8 14.1 1.0
O A:ALA74 4.8 14.6 1.0
CB A:ASP139 4.8 14.1 1.0
CB A:ALA74 4.9 13.8 1.0
CG A:HIS264 4.9 29.1 1.0
O A:HOH560 4.9 32.3 1.0
CD2 A:HIS264 4.9 32.0 1.0
CD1 A:TYR17 5.0 22.4 1.0
CA A:GLY201 5.0 16.3 1.0
O A:ASN265 5.0 20.5 1.0

Calcium binding site 2 out of 2 in 5m8e

Go back to Calcium Binding Sites List in 5m8e
Calcium binding site 2 out of 2 in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:34.4
occ:1.00
OE2 B:GLU76 2.2 19.2 1.0
O B:HOH511 2.2 15.3 1.0
O B:HOH659 2.4 18.4 1.0
CE1 B:HIS264 3.2 30.4 1.0
CD B:GLU76 3.2 30.9 1.0
O B:HOH537 3.6 24.7 1.0
CG B:GLU76 3.6 20.9 1.0
ND1 B:HIS264 3.9 31.2 1.0
O B:PRO202 4.0 19.8 1.0
NE2 B:HIS264 4.1 30.8 1.0
O B:HOH576 4.1 25.4 1.0
O B:HOH525 4.2 21.0 1.0
O B:ASP139 4.3 13.6 1.0
OE1 B:GLU76 4.3 16.3 1.0
O B:ALA140 4.6 16.0 1.0
C B:ASP139 4.7 14.3 1.0
O B:ASN265 4.8 18.5 1.0
CA B:ASP139 4.8 11.5 1.0
CD1 B:TYR17 4.9 19.9 1.0
O B:ALA74 4.9 13.8 1.0
O B:HOH592 4.9 32.7 1.0
CB B:ASP139 4.9 12.5 1.0
CB B:ALA74 5.0 14.0 1.0
CB B:THR141 5.0 17.9 1.0

Reference:

J.A.Linares-Pasten, P.Falck, K.Albasri, S.Kjellstrom, P.Adlercreutz, D.T.Logan, E.N.Karlsson. Three-Dimensional Structures and Functional Studies of Two GH43 Arabinofuranosidases From Weissella Sp. Strain 142 and Lactobacillus Brevis. Febs J. V. 284 2019 2017.
ISSN: ISSN 1742-4658
PubMed: 28485897
DOI: 10.1111/FEBS.14101
Page generated: Sat Dec 12 05:37:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy