Calcium in PDB 5m8e: Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142

All present enzymatic activity of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142:
3.2.1.55;

The structure of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142, PDB code: 5m8e was solved by J.Linares-Pasten, D.T.Logan, E.Nordberg Karlsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.70 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.880, 71.930, 79.510, 90.00, 101.93, 90.00
R / Rfree (%)	17.2 / 21.6

The binding sites of Calcium atom in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 (pdb code 5m8e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142, PDB code: 5m8e:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:37.7 occ:1.00 OE2 A:GLU76 2.2 21.8 1.0 O A:HOH503 2.3 18.9 1.0 O A:HOH573 2.4 19.0 1.0 CE1 A:HIS264 2.9 31.6 1.0 CD A:GLU76 3.3 27.3 1.0 O A:HOH518 3.5 25.2 1.0 O A:HOH593 3.5 37.1 1.0 CG A:GLU76 3.7 22.4 1.0 ND1 A:HIS264 3.8 32.1 1.0 NE2 A:HIS264 3.8 31.7 1.0 O A:PRO202 4.1 20.9 1.0 O A:HOH511 4.1 19.6 1.0 O A:ASP139 4.2 17.2 1.0 O A:HOH506 4.2 16.8 1.0 OE1 A:GLU76 4.4 19.6 1.0 C A:ASP139 4.6 19.1 1.0 O A:ALA140 4.6 20.4 1.0 CA A:ASP139 4.8 14.1 1.0 O A:ALA74 4.8 14.6 1.0 CB A:ASP139 4.8 14.1 1.0 CB A:ALA74 4.9 13.8 1.0 CG A:HIS264 4.9 29.1 1.0 O A:HOH560 4.9 32.3 1.0 CD2 A:HIS264 4.9 32.0 1.0 CD1 A:TYR17 5.0 22.4 1.0 CA A:GLY201 5.0 16.3 1.0 O A:ASN265 5.0 20.5 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A GH43 Arabonofuranosidase From Weissella Sp. Strain 142 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:34.4 occ:1.00 OE2 B:GLU76 2.2 19.2 1.0 O B:HOH511 2.2 15.3 1.0 O B:HOH659 2.4 18.4 1.0 CE1 B:HIS264 3.2 30.4 1.0 CD B:GLU76 3.2 30.9 1.0 O B:HOH537 3.6 24.7 1.0 CG B:GLU76 3.6 20.9 1.0 ND1 B:HIS264 3.9 31.2 1.0 O B:PRO202 4.0 19.8 1.0 NE2 B:HIS264 4.1 30.8 1.0 O B:HOH576 4.1 25.4 1.0 O B:HOH525 4.2 21.0 1.0 O B:ASP139 4.3 13.6 1.0 OE1 B:GLU76 4.3 16.3 1.0 O B:ALA140 4.6 16.0 1.0 C B:ASP139 4.7 14.3 1.0 O B:ASN265 4.8 18.5 1.0 CA B:ASP139 4.8 11.5 1.0 CD1 B:TYR17 4.9 19.9 1.0 O B:ALA74 4.9 13.8 1.0 O B:HOH592 4.9 32.7 1.0 CB B:ASP139 4.9 12.5 1.0 CB B:ALA74 5.0 14.0 1.0 CB B:THR141 5.0 17.9 1.0

J.A.Linares-Pasten, P.Falck, K.Albasri, S.Kjellstrom, P.Adlercreutz, D.T.Logan, E.N.Karlsson. Three-Dimensional Structures and Functional Studies of Two GH43 Arabinofuranosidases From Weissella Sp. Strain 142 and Lactobacillus Brevis. Febs J. V. 284 2019 2017.
ISSN: ISSN 1742-4658
PubMed: 28485897
DOI: 10.1111/FEBS.14101