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Calcium in PDB 5ma7: Structure of Thermolysin in Complex with Inhibitor (JC306).
Enzymatic activity of Structure of Thermolysin in Complex with Inhibitor (JC306).
All present enzymatic activity of Structure of Thermolysin in Complex with Inhibitor (JC306).:
3.4.24.27;
3.4.24.27;
Protein crystallography data
The structure of Structure of Thermolysin in Complex with Inhibitor (JC306)., PDB code: 5ma7
was solved by
S.G.Krimmer,
J.Cramer,
A.Heine,
G.Klebe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 43.67 / 1.30 |
| Space group | P 61 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 92.754, 92.754, 129.766, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 11.2 / 13.9 |
Other elements in 5ma7:
The structure of Structure of Thermolysin in Complex with Inhibitor (JC306). also contains other interesting chemical elements:
| Zinc | (Zn) | 1 atom |
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Thermolysin in Complex with Inhibitor (JC306).
(pdb code 5ma7). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Thermolysin in Complex with Inhibitor (JC306)., PDB code: 5ma7:
Jump to Calcium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Calcium where determined in the Structure of Thermolysin in Complex with Inhibitor (JC306)., PDB code: 5ma7:
Jump to Calcium binding site number: 1; 2; 3; 4;
Calcium binding site 1 out of 4 in 5ma7
Go back to
Calcium Binding Sites List in 5ma7
Calcium binding site 1 out
of 4 in the Structure of Thermolysin in Complex with Inhibitor (JC306).
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Thermolysin in Complex with Inhibitor (JC306). within 5.0Å range:
|
Calcium binding site 2 out of 4 in 5ma7
Go back to
Calcium Binding Sites List in 5ma7
Calcium binding site 2 out
of 4 in the Structure of Thermolysin in Complex with Inhibitor (JC306).
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Thermolysin in Complex with Inhibitor (JC306). within 5.0Å range:
|
Calcium binding site 3 out of 4 in 5ma7
Go back to
Calcium Binding Sites List in 5ma7
Calcium binding site 3 out
of 4 in the Structure of Thermolysin in Complex with Inhibitor (JC306).
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Thermolysin in Complex with Inhibitor (JC306). within 5.0Å range:
|
Calcium binding site 4 out of 4 in 5ma7
Go back to
Calcium Binding Sites List in 5ma7
Calcium binding site 4 out
of 4 in the Structure of Thermolysin in Complex with Inhibitor (JC306).
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Thermolysin in Complex with Inhibitor (JC306). within 5.0Å range:
|
Reference:
S.G.Krimmer,
J.Cramer,
J.Schiebel,
A.Heine,
G.Klebe.
How Nothing Boosts Affinity: Hydrophobic Ligand Binding to the Virtually Vacated S1' Pocket of Thermolysin. J. Am. Chem. Soc. V. 139 10419 2017.
ISSN: ESSN 1520-5126
PubMed: 28696673
DOI: 10.1021/JACS.7B05028
Page generated: Sat Dec 12 05:37:09 2020
ISSN: ESSN 1520-5126
PubMed: 28696673
DOI: 10.1021/JACS.7B05028
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