Calcium in PDB 5mfo: Designed Armadillo Repeat Protein YIIIM3AIII
Protein crystallography data
The structure of Designed Armadillo Repeat Protein YIIIM3AIII, PDB code: 5mfo
was solved by
S.Hansen,
P.Ernst,
C.Reichen,
C.Ewald,
P.Mittl,
A.Plueckthun,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.29 /
1.30
|
|
Space group
|
P 43
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.920,
83.920,
166.150,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.9 /
17.8
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
19;
Binding sites:
The binding sites of Calcium atom in the Designed Armadillo Repeat Protein YIIIM3AIII
(pdb code 5mfo). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 19 binding sites of Calcium where determined in the
Designed Armadillo Repeat Protein YIIIM3AIII, PDB code: 5mfo:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 1 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:19.1
occ:0.91
|
O
|
A:GLN18
|
2.3
|
21.4
|
1.0
|
|
O
|
A:HOH523
|
2.4
|
24.5
|
1.0
|
|
OD1
|
A:ASN21
|
2.4
|
21.1
|
1.0
|
|
HD21
|
A:ASN21
|
3.3
|
27.9
|
1.0
|
|
C
|
A:GLN18
|
3.4
|
21.5
|
1.0
|
|
CG
|
A:ASN21
|
3.4
|
24.3
|
1.0
|
|
HA
|
A:GLN18
|
3.5
|
25.4
|
1.0
|
|
ND2
|
A:ASN21
|
3.7
|
23.3
|
1.0
|
|
HB3
|
A:GLN18
|
3.8
|
26.6
|
1.0
|
|
CA
|
A:GLN18
|
3.9
|
21.2
|
1.0
|
|
H
|
A:ASN21
|
4.1
|
24.7
|
1.0
|
|
O
|
A:HOH540
|
4.3
|
50.9
|
1.0
|
|
CB
|
A:GLN18
|
4.4
|
22.2
|
1.0
|
|
HA
|
A:GLN19
|
4.4
|
28.4
|
1.0
|
|
O
|
A:HOH484
|
4.5
|
27.1
|
1.0
|
|
N
|
A:GLN19
|
4.5
|
22.6
|
1.0
|
|
HD22
|
A:ASN21
|
4.6
|
27.9
|
1.0
|
|
HG2
|
A:GLN18
|
4.7
|
26.5
|
1.0
|
|
CB
|
A:ASN21
|
4.7
|
21.4
|
1.0
|
|
C
|
A:ASN21
|
4.8
|
22.2
|
1.0
|
|
N
|
A:ASN21
|
4.8
|
20.6
|
1.0
|
|
HA
|
A:SER22
|
4.9
|
29.0
|
1.0
|
|
CA
|
A:GLN19
|
4.9
|
23.6
|
1.0
|
|
O
|
A:ASN21
|
5.0
|
23.8
|
1.0
|
|
Calcium binding site 2 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 2 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca302
b:29.8
occ:0.53
|
O
|
A:HOH526
|
2.2
|
40.7
|
1.0
|
|
O
|
A:SER166
|
2.3
|
32.3
|
1.0
|
|
O
|
B:HOH427
|
2.3
|
41.2
|
1.0
|
|
O
|
A:HOH434
|
2.7
|
38.5
|
1.0
|
|
OD1
|
B:ASN21
|
2.9
|
65.3
|
1.0
|
|
O
|
A:HOH429
|
3.4
|
41.5
|
1.0
|
|
C
|
A:SER166
|
3.5
|
26.9
|
1.0
|
|
HB3
|
A:SER166
|
3.6
|
40.1
|
1.0
|
|
HB3
|
B:ASN21
|
3.8
|
32.0
|
1.0
|
|
HA2
|
A:GLY167
|
3.9
|
34.2
|
1.0
|
|
CG
|
B:ASN21
|
4.0
|
51.3
|
1.0
|
|
O
|
A:HOH507
|
4.3
|
31.2
|
1.0
|
|
HA
|
A:SER166
|
4.3
|
36.0
|
1.0
|
|
CA
|
A:SER166
|
4.4
|
30.0
|
1.0
|
|
CB
|
B:ASN21
|
4.4
|
26.6
|
1.0
|
|
CB
|
A:SER166
|
4.4
|
33.4
|
1.0
|
|
N
|
A:GLY167
|
4.4
|
27.3
|
1.0
|
|
O
|
A:GLY167
|
4.4
|
32.3
|
1.0
|
|
O
|
B:ASN21
|
4.4
|
26.3
|
1.0
|
|
HA
|
B:ASN21
|
4.5
|
27.9
|
1.0
|
|
CA
|
A:GLY167
|
4.5
|
28.5
|
1.0
|
|
O
|
B:HOH477
|
4.5
|
32.8
|
1.0
|
|
C
|
A:GLY167
|
4.7
|
31.2
|
1.0
|
|
O
|
A:HOH515
|
4.8
|
45.5
|
1.0
|
|
O
|
A:HOH462
|
4.9
|
32.6
|
1.0
|
|
CA
|
B:ASN21
|
4.9
|
23.3
|
1.0
|
|
HB2
|
A:SER166
|
5.0
|
40.1
|
1.0
|
|
Calcium binding site 3 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 3 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca303
b:21.2
occ:0.61
|
O
|
A:HOH490
|
2.1
|
35.2
|
1.0
|
|
O
|
B:HOH492
|
2.3
|
25.3
|
1.0
|
|
O
|
A:HOH444
|
2.3
|
25.1
|
1.0
|
|
O
|
A:HOH522
|
2.3
|
33.5
|
1.0
|
|
O
|
A:HOH511
|
2.5
|
59.9
|
1.0
|
|
O
|
B:HOH544
|
2.6
|
48.6
|
1.0
|
|
OG
|
A:SER124
|
2.6
|
22.8
|
1.0
|
|
O
|
A:HOH494
|
3.1
|
47.0
|
1.0
|
|
O
|
B:HOH403
|
3.2
|
59.0
|
1.0
|
|
HB2
|
A:SER124
|
3.5
|
25.3
|
1.0
|
|
CB
|
A:SER124
|
3.6
|
21.1
|
1.0
|
|
HA
|
A:SER82
|
3.9
|
23.5
|
1.0
|
|
HE22
|
B:GLN19
|
4.0
|
50.0
|
1.0
|
|
HB3
|
A:SER124
|
4.1
|
25.3
|
1.0
|
|
HD11
|
A:ILE88
|
4.2
|
21.9
|
1.0
|
|
O
|
A:HOH478
|
4.2
|
28.3
|
1.0
|
|
O
|
A:SER82
|
4.3
|
20.5
|
1.0
|
|
OE1
|
B:GLU27
|
4.3
|
28.1
|
1.0
|
|
O
|
A:SER124
|
4.4
|
21.2
|
1.0
|
|
O
|
B:HOH582
|
4.5
|
28.5
|
1.0
|
|
O
|
A:HOH499
|
4.5
|
50.6
|
1.0
|
|
O
|
A:GLY83
|
4.5
|
20.7
|
1.0
|
|
O
|
A:ASN121
|
4.6
|
16.6
|
1.0
|
|
OE2
|
B:GLU27
|
4.7
|
34.9
|
1.0
|
|
C
|
A:SER82
|
4.7
|
19.3
|
1.0
|
|
O
|
A:HOH537
|
4.7
|
28.3
|
1.0
|
|
C
|
A:SER124
|
4.7
|
19.6
|
1.0
|
|
O
|
A:ALA81
|
4.7
|
19.3
|
1.0
|
|
CA
|
A:SER82
|
4.7
|
19.6
|
1.0
|
|
CA
|
A:SER124
|
4.8
|
19.2
|
1.0
|
|
HA
|
A:ASN121
|
4.8
|
18.3
|
1.0
|
|
O
|
A:HOH450
|
4.8
|
45.1
|
1.0
|
|
NE2
|
B:GLN19
|
4.8
|
41.7
|
1.0
|
|
CD
|
B:GLU27
|
4.9
|
34.4
|
1.0
|
|
Calcium binding site 4 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 4 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca301
b:20.6
occ:0.60
|
O
|
D:HOH408
|
2.1
|
27.3
|
1.0
|
|
O
|
B:HOH406
|
2.1
|
27.6
|
1.0
|
|
O
|
B:HOH568
|
2.3
|
52.0
|
1.0
|
|
OE1
|
B:GLU67
|
2.5
|
20.6
|
1.0
|
|
OE1
|
D:GLU109
|
2.6
|
18.9
|
1.0
|
|
O
|
D:PRO107
|
2.6
|
22.1
|
1.0
|
|
O
|
B:PRO65
|
2.7
|
29.1
|
1.0
|
|
O
|
B:HOH473
|
2.9
|
36.2
|
1.0
|
|
O
|
D:HOH435
|
3.0
|
35.4
|
1.0
|
|
HA
|
D:ASN108
|
3.1
|
20.0
|
1.0
|
|
HA
|
B:ASN66
|
3.3
|
23.7
|
1.0
|
|
CD
|
D:GLU109
|
3.5
|
19.7
|
1.0
|
|
CD
|
B:GLU67
|
3.5
|
23.9
|
1.0
|
|
H
|
B:GLU67
|
3.6
|
21.1
|
1.0
|
|
H
|
D:GLU109
|
3.6
|
18.0
|
1.0
|
|
C
|
D:PRO107
|
3.7
|
18.9
|
1.0
|
|
OE2
|
D:GLU109
|
3.7
|
24.9
|
1.0
|
|
OE2
|
B:GLU67
|
3.7
|
29.4
|
1.0
|
|
C
|
B:PRO65
|
3.8
|
26.7
|
1.0
|
|
CA
|
D:ASN108
|
4.0
|
16.7
|
1.0
|
|
HB2
|
D:PRO107
|
4.1
|
24.7
|
1.0
|
|
CA
|
B:ASN66
|
4.1
|
19.7
|
1.0
|
|
HB2
|
B:PRO65
|
4.3
|
31.4
|
1.0
|
|
O
|
D:HOH570
|
4.3
|
32.9
|
1.0
|
|
N
|
D:ASN108
|
4.3
|
16.9
|
1.0
|
|
N
|
B:GLU67
|
4.3
|
17.6
|
1.0
|
|
N
|
D:GLU109
|
4.3
|
15.0
|
1.0
|
|
N
|
B:ASN66
|
4.4
|
20.1
|
1.0
|
|
O
|
B:HOH512
|
4.5
|
40.0
|
1.0
|
|
C
|
D:ASN108
|
4.7
|
15.4
|
1.0
|
|
C
|
B:ASN66
|
4.8
|
18.0
|
1.0
|
|
CA
|
D:PRO107
|
4.8
|
19.6
|
1.0
|
|
CG
|
B:GLU67
|
4.8
|
19.1
|
1.0
|
|
HB2
|
B:GLU67
|
4.8
|
22.4
|
1.0
|
|
CG
|
D:GLU109
|
4.9
|
18.6
|
1.0
|
|
CB
|
D:PRO107
|
4.9
|
20.6
|
1.0
|
|
O
|
B:HOH613
|
4.9
|
50.9
|
1.0
|
|
HB2
|
D:ASN108
|
5.0
|
19.0
|
1.0
|
|
CA
|
B:PRO65
|
5.0
|
23.8
|
1.0
|
|
Calcium binding site 5 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 5 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca302
b:18.6
occ:0.70
|
O
|
B:HOH559
|
2.4
|
31.7
|
1.0
|
|
O
|
B:HOH501
|
2.4
|
27.0
|
1.0
|
|
OD1
|
B:ASN121
|
2.5
|
18.8
|
1.0
|
|
CG
|
B:ASN121
|
3.7
|
17.8
|
1.0
|
|
O
|
B:HOH421
|
3.8
|
39.3
|
1.0
|
|
HD21
|
B:ASN121
|
4.0
|
34.0
|
1.0
|
|
ND2
|
B:ASN121
|
4.3
|
28.3
|
1.0
|
|
HA
|
B:ASN121
|
4.3
|
16.9
|
1.0
|
|
O
|
B:HOH538
|
4.7
|
20.7
|
1.0
|
|
HZ2
|
B:TRP117
|
4.7
|
37.5
|
0.5
|
|
HE1
|
B:TRP117
|
4.7
|
28.8
|
0.5
|
|
O
|
B:HOH454
|
4.7
|
16.6
|
1.0
|
|
O
|
B:HOH511
|
4.8
|
78.0
|
1.0
|
|
OG
|
B:SER82
|
4.8
|
24.3
|
1.0
|
|
CB
|
B:ASN121
|
4.8
|
14.6
|
1.0
|
|
HB3
|
B:SER82
|
5.0
|
22.3
|
1.0
|
|
Calcium binding site 6 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 6 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca303
b:37.9
occ:0.91
|
O
|
B:HOH535
|
2.3
|
39.5
|
1.0
|
|
O
|
E:HOH509
|
2.3
|
39.0
|
1.0
|
|
O
|
B:HOH503
|
2.3
|
30.5
|
1.0
|
|
O
|
E:PRO149
|
2.4
|
23.2
|
1.0
|
|
O
|
E:HOH409
|
2.4
|
48.4
|
1.0
|
|
O
|
B:PRO149
|
2.4
|
22.6
|
1.0
|
|
O
|
B:HOH401
|
2.5
|
18.4
|
1.0
|
|
O
|
F:HOH469
|
2.7
|
59.9
|
1.0
|
|
HB2
|
E:PRO149
|
3.1
|
29.5
|
1.0
|
|
HB2
|
B:PRO149
|
3.1
|
29.6
|
1.0
|
|
C
|
E:PRO149
|
3.4
|
21.5
|
1.0
|
|
C
|
B:PRO149
|
3.5
|
22.2
|
1.0
|
|
HA
|
E:PRO149
|
3.8
|
27.0
|
1.0
|
|
CB
|
E:PRO149
|
3.8
|
24.6
|
1.0
|
|
HA
|
B:PRO149
|
3.8
|
27.2
|
1.0
|
|
CB
|
B:PRO149
|
3.8
|
24.7
|
1.0
|
|
O
|
E:HOH419
|
3.8
|
78.6
|
1.0
|
|
CA
|
E:PRO149
|
3.9
|
22.5
|
1.0
|
|
CA
|
B:PRO149
|
3.9
|
22.7
|
1.0
|
|
O
|
B:HOH474
|
3.9
|
39.4
|
1.0
|
|
HB3
|
E:PRO149
|
4.0
|
29.5
|
1.0
|
|
HB3
|
B:PRO149
|
4.1
|
29.6
|
1.0
|
|
OE1
|
E:GLU151
|
4.2
|
25.3
|
1.0
|
|
OE2
|
B:GLU151
|
4.2
|
27.0
|
1.0
|
|
OE2
|
E:GLU151
|
4.3
|
20.1
|
1.0
|
|
OE1
|
B:GLU151
|
4.3
|
19.9
|
1.0
|
|
O
|
B:HOH485
|
4.4
|
46.2
|
1.0
|
|
O
|
E:HOH553
|
4.4
|
66.1
|
1.0
|
|
HA
|
B:ASN150
|
4.4
|
20.1
|
1.0
|
|
HA
|
E:ASN150
|
4.4
|
20.2
|
1.0
|
|
O
|
E:HOH477
|
4.5
|
81.8
|
1.0
|
|
CD
|
E:GLU151
|
4.6
|
18.3
|
1.0
|
|
CD
|
B:GLU151
|
4.6
|
18.9
|
1.0
|
|
N
|
E:ASN150
|
4.6
|
18.9
|
1.0
|
|
N
|
B:ASN150
|
4.6
|
19.1
|
1.0
|
|
O
|
D:HOH557
|
4.8
|
43.0
|
1.0
|
|
O
|
D:PRO23
|
4.9
|
32.4
|
1.0
|
|
HG2
|
D:GLN25
|
4.9
|
23.7
|
1.0
|
|
O
|
F:PRO23
|
4.9
|
31.4
|
1.0
|
|
HG2
|
F:GLN25
|
4.9
|
22.6
|
1.0
|
|
Calcium binding site 7 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 7 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca304
b:17.8
occ:0.67
|
O
|
D:HOH404
|
2.1
|
27.5
|
1.0
|
|
O
|
B:HOH410
|
2.2
|
22.3
|
1.0
|
|
OE1
|
D:GLU67
|
2.5
|
17.5
|
1.0
|
|
O
|
D:HOH612
|
2.5
|
51.5
|
1.0
|
|
O
|
B:PRO107
|
2.6
|
23.2
|
1.0
|
|
OE1
|
B:GLU109
|
2.6
|
17.7
|
1.0
|
|
O
|
D:PRO65
|
2.6
|
19.9
|
1.0
|
|
O
|
B:HOH444
|
2.8
|
31.0
|
1.0
|
|
O
|
D:HOH445
|
2.8
|
30.9
|
1.0
|
|
HA
|
B:ASN108
|
3.2
|
19.3
|
1.0
|
|
HA
|
D:ASN66
|
3.2
|
17.3
|
1.0
|
|
CD
|
D:GLU67
|
3.4
|
19.9
|
1.0
|
|
CD
|
B:GLU109
|
3.5
|
18.9
|
1.0
|
|
OE2
|
D:GLU67
|
3.6
|
27.2
|
1.0
|
|
H
|
D:GLU67
|
3.6
|
17.0
|
1.0
|
|
H
|
B:GLU109
|
3.7
|
18.2
|
1.0
|
|
C
|
B:PRO107
|
3.7
|
21.6
|
1.0
|
|
C
|
D:PRO65
|
3.7
|
17.0
|
1.0
|
|
OE2
|
B:GLU109
|
3.7
|
23.1
|
1.0
|
|
HB2
|
B:PRO107
|
4.0
|
31.8
|
1.0
|
|
CA
|
B:ASN108
|
4.1
|
16.1
|
1.0
|
|
CA
|
D:ASN66
|
4.1
|
14.4
|
1.0
|
|
HB2
|
D:PRO65
|
4.1
|
26.7
|
1.0
|
|
O
|
B:HOH541
|
4.3
|
31.8
|
1.0
|
|
N
|
B:ASN108
|
4.3
|
16.5
|
1.0
|
|
N
|
D:ASN66
|
4.3
|
15.2
|
1.0
|
|
N
|
D:GLU67
|
4.3
|
14.2
|
1.0
|
|
N
|
B:GLU109
|
4.4
|
15.2
|
1.0
|
|
O
|
D:HOH588
|
4.5
|
39.6
|
1.0
|
|
C
|
D:ASN66
|
4.8
|
13.9
|
1.0
|
|
CA
|
B:PRO107
|
4.8
|
20.5
|
1.0
|
|
CG
|
D:GLU67
|
4.8
|
16.8
|
1.0
|
|
C
|
B:ASN108
|
4.8
|
15.3
|
1.0
|
|
CB
|
B:PRO107
|
4.8
|
26.5
|
1.0
|
|
CA
|
D:PRO65
|
4.8
|
17.3
|
1.0
|
|
HB2
|
D:GLU67
|
4.9
|
18.5
|
1.0
|
|
CG
|
B:GLU109
|
4.9
|
16.2
|
1.0
|
|
CB
|
D:PRO65
|
4.9
|
22.2
|
1.0
|
|
O
|
B:HOH595
|
4.9
|
45.3
|
1.0
|
|
Calcium binding site 8 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 8 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:18.1
occ:0.84
|
O
|
C:GLN18
|
2.3
|
21.6
|
1.0
|
|
OE1
|
F:GLN186
|
2.3
|
22.2
|
1.0
|
|
O
|
C:HOH514
|
2.3
|
24.0
|
1.0
|
|
OD1
|
C:ASN21
|
2.4
|
21.4
|
1.0
|
|
O
|
F:HOH512
|
2.4
|
18.8
|
1.0
|
|
O
|
F:HOH563
|
2.5
|
27.1
|
1.0
|
|
CD
|
F:GLN186
|
3.3
|
20.2
|
1.0
|
|
HD21
|
C:ASN21
|
3.3
|
29.0
|
1.0
|
|
C
|
C:GLN18
|
3.4
|
21.8
|
1.0
|
|
CG
|
C:ASN21
|
3.4
|
24.4
|
1.0
|
|
HA
|
C:GLN18
|
3.4
|
25.7
|
1.0
|
|
HG2
|
F:GLN186
|
3.6
|
26.7
|
1.0
|
|
HG3
|
F:GLN186
|
3.7
|
26.7
|
1.0
|
|
ND2
|
C:ASN21
|
3.8
|
24.2
|
1.0
|
|
HB3
|
C:GLN18
|
3.8
|
27.2
|
1.0
|
|
CG
|
F:GLN186
|
3.8
|
22.3
|
1.0
|
|
CA
|
C:GLN18
|
3.9
|
21.4
|
1.0
|
|
H
|
C:ASN21
|
4.1
|
26.3
|
1.0
|
|
O
|
C:HOH531
|
4.3
|
66.2
|
1.0
|
|
CB
|
C:GLN18
|
4.4
|
22.7
|
1.0
|
|
O
|
C:HOH485
|
4.4
|
26.4
|
1.0
|
|
HA
|
C:GLN19
|
4.5
|
28.7
|
1.0
|
|
NE2
|
F:GLN186
|
4.5
|
20.2
|
1.0
|
|
N
|
C:GLN19
|
4.5
|
22.9
|
1.0
|
|
OE1
|
F:GLU185
|
4.5
|
28.2
|
1.0
|
|
HB2
|
F:PRO182
|
4.6
|
25.8
|
1.0
|
|
HD22
|
C:ASN21
|
4.6
|
29.0
|
1.0
|
|
O
|
F:HOH629
|
4.6
|
28.9
|
1.0
|
|
O
|
F:PRO182
|
4.6
|
20.4
|
1.0
|
|
HE22
|
F:GLN186
|
4.7
|
24.3
|
1.0
|
|
CB
|
C:ASN21
|
4.7
|
21.5
|
1.0
|
|
HG2
|
C:GLN18
|
4.8
|
29.1
|
1.0
|
|
N
|
C:ASN21
|
4.8
|
21.9
|
1.0
|
|
C
|
C:ASN21
|
4.8
|
22.1
|
1.0
|
|
HA
|
C:SER22
|
4.9
|
30.2
|
1.0
|
|
CA
|
C:GLN19
|
5.0
|
23.9
|
1.0
|
|
O
|
C:ASN21
|
5.0
|
23.5
|
1.0
|
|
Calcium binding site 9 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 9 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:32.8
occ:0.65
|
O
|
C:SER166
|
2.3
|
32.3
|
1.0
|
|
O
|
C:HOH411
|
2.8
|
44.5
|
1.0
|
|
C
|
C:SER166
|
3.5
|
26.7
|
1.0
|
|
HB3
|
C:SER166
|
3.6
|
38.6
|
1.0
|
|
HA2
|
C:GLY167
|
3.9
|
34.2
|
1.0
|
|
O
|
C:HOH509
|
4.3
|
31.2
|
1.0
|
|
HA
|
C:SER166
|
4.4
|
35.9
|
1.0
|
|
CA
|
C:SER166
|
4.4
|
29.9
|
1.0
|
|
O
|
C:GLY167
|
4.4
|
34.2
|
1.0
|
|
N
|
C:GLY167
|
4.4
|
30.7
|
1.0
|
|
CB
|
C:SER166
|
4.4
|
32.2
|
1.0
|
|
CA
|
C:GLY167
|
4.5
|
28.5
|
1.0
|
|
C
|
C:GLY167
|
4.7
|
30.2
|
1.0
|
|
O
|
C:HOH505
|
4.8
|
43.8
|
1.0
|
|
O
|
C:HOH478
|
4.9
|
35.5
|
1.0
|
|
HB2
|
C:SER166
|
5.0
|
38.6
|
1.0
|
|
Calcium binding site 10 out
of 19 in 5mfo
Go back to
Calcium Binding Sites List in 5mfo
Calcium binding site 10 out
of 19 in the Designed Armadillo Repeat Protein YIIIM3AIII
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Designed Armadillo Repeat Protein YIIIM3AIII within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:15.2
occ:1.00
|
O
|
D:SER124
|
2.3
|
18.5
|
0.8
|
|
O
|
D:HOH542
|
2.4
|
16.5
|
1.0
|
|
O
|
D:HOH551
|
2.5
|
24.4
|
1.0
|
|
O
|
D:GLY125
|
2.5
|
16.4
|
1.0
|
|
O
|
D:SER124
|
2.6
|
16.6
|
0.2
|
|
C
|
D:GLY125
|
3.4
|
14.6
|
1.0
|
|
C
|
D:SER124
|
3.4
|
14.8
|
0.8
|
|
C
|
D:SER124
|
3.4
|
15.7
|
0.2
|
|
HA2
|
D:GLY125
|
3.7
|
19.7
|
1.0
|
|
CA
|
D:GLY125
|
3.9
|
16.4
|
1.0
|
|
HA2
|
D:GLY126
|
4.0
|
19.8
|
1.0
|
|
N
|
D:GLY125
|
4.0
|
15.3
|
1.0
|
|
HA
|
D:SER124
|
4.2
|
19.2
|
0.2
|
|
HA
|
D:SER124
|
4.2
|
18.0
|
0.8
|
|
N
|
D:GLY126
|
4.3
|
15.6
|
1.0
|
|
O
|
D:HOH446
|
4.4
|
22.5
|
1.0
|
|
CA
|
D:SER124
|
4.4
|
16.0
|
0.2
|
|
CA
|
D:SER124
|
4.4
|
15.0
|
0.8
|
|
O
|
D:HOH617
|
4.5
|
31.2
|
1.0
|
|
O
|
D:HOH489
|
4.5
|
26.7
|
1.0
|
|
O
|
D:HOH500
|
4.5
|
18.0
|
1.0
|
|
CA
|
D:GLY126
|
4.6
|
16.5
|
1.0
|
|
HB3
|
D:SER124
|
4.7
|
22.4
|
0.2
|
|
HB2
|
D:SER124
|
4.8
|
22.1
|
0.8
|
|
H
|
D:GLY125
|
4.8
|
18.4
|
0.2
|
|
H
|
D:GLY125
|
4.8
|
18.4
|
0.8
|
|
HA3
|
D:GLY125
|
4.8
|
19.7
|
1.0
|
|
HD11
|
D:ILE130
|
4.9
|
19.7
|
1.0
|
|
OD1
|
D:ASN85
|
4.9
|
16.9
|
1.0
|
|
Reference:
S.Hansen,
P.Ernst,
S.L.B.Konig,
C.Reichen,
C.Ewald,
D.Nettels,
P.R.E.Mittl,
B.Schuler,
A.Pluckthun.
Curvature of Designed Armadillo Repeat Proteins Allows Modular Peptide Binding. J. Struct. Biol. V. 201 108 2018.
ISSN: ESSN 1095-8657
PubMed: 28864298
DOI: 10.1016/J.JSB.2017.08.009
Page generated: Sat Dec 12 05:37:40 2020
|
