Atomistry » Calcium » PDB 5mi5-5mop » 5mnp
Atomistry »
  Calcium »
    PDB 5mi5-5mop »
      5mnp »

Calcium in PDB 5mnp: Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K)

Enzymatic activity of Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K)

All present enzymatic activity of Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K):
3.4.21.4;

Protein crystallography data

The structure of Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K), PDB code: 5mnp was solved by J.Schiebel, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.67 / 1.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.921, 58.623, 67.731, 90.00, 90.00, 90.00
R / Rfree (%) 9 / 10.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K) (pdb code 5mnp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K), PDB code: 5mnp:

Calcium binding site 1 out of 1 in 5mnp

Go back to Calcium Binding Sites List in 5mnp
Calcium binding site 1 out of 1 in the Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:8.2
occ:1.00
OE1 A:GLU70 2.3 9.6 1.0
O A:VAL75 2.3 9.6 1.0
OE2 A:GLU80 2.3 9.6 1.0
O A:ASN72 2.3 8.7 1.0
O A:HOH457 2.4 11.2 1.0
O A:HOH408 2.4 9.9 1.0
H2 A:HOH408 2.7 11.9 1.0
HA A:VAL76 3.3 12.2 1.0
CD A:GLU70 3.3 8.4 1.0
CD A:GLU80 3.4 9.3 1.0
C A:VAL75 3.4 8.8 1.0
C A:ASN72 3.5 7.6 1.0
H A:GLU77 3.5 12.2 1.0
HA A:ILE73 3.6 9.5 0.2
H A:VAL75 3.6 10.6 1.0
HA A:ILE73 3.6 9.6 0.8
HG3 A:GLU77 3.7 14.4 1.0
OE2 A:GLU70 3.8 10.4 1.0
CG A:GLU80 3.8 12.2 1.0
H A:ASP71 3.8 9.5 1.0
HA A:GLU70 3.9 9.4 1.0
CA A:VAL76 4.1 10.2 1.0
N A:GLU77 4.2 10.2 1.0
HB3 A:ASN72 4.2 11.4 1.0
N A:VAL76 4.2 9.7 1.0
N A:VAL75 4.3 8.8 1.0
H A:ASN72 4.3 9.7 1.0
OE1 A:GLU77 4.3 11.8 1.0
CA A:ILE73 4.3 7.9 0.2
CA A:ILE73 4.3 8.0 0.8
N A:ILE73 4.3 7.9 1.0
N A:ASN72 4.4 8.1 1.0
CA A:VAL75 4.5 9.2 1.0
CA A:ASN72 4.5 8.2 1.0
CG A:GLU77 4.5 12.0 1.0
O A:HOH456 4.5 12.4 1.0
HB3 A:GLU70 4.5 9.5 1.0
OE1 A:GLU80 4.5 10.5 1.0
C A:ILE73 4.6 8.1 1.0
N A:ASP71 4.6 7.9 1.0
CG A:GLU70 4.6 8.6 1.0
C A:VAL76 4.6 10.7 1.0
HB A:VAL75 4.6 13.1 1.0
CA A:GLU70 4.7 7.9 1.0
CB A:GLU77 4.8 12.3 1.0
CD A:GLU77 4.8 13.6 1.0
CB A:GLU70 4.8 7.9 1.0
CB A:ASN72 4.9 9.5 1.0
O A:HOH545 4.9 25.0 1.0
N A:ASN74 4.9 7.9 1.0
H A:ASN74 4.9 9.5 1.0
O A:ILE73 5.0 9.7 1.0
HG2 A:GLU70 5.0 10.2 1.0

Reference:

J.Schiebel, A.Heine, G.Klebe. Cationic Trypsin in Complex with N-Amidinopiperidine (at 295 K) To Be Published.
Page generated: Mon Jul 15 08:31:27 2024

Last articles

Ca in 3CU2
Ca in 3CU9
Ca in 3CTN
Ca in 3CTZ
Ca in 3CSI
Ca in 3CQO
Ca in 3CSU
Ca in 3CR5
Ca in 3CSH
Ca in 3CQ8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy