Calcium in PDB 5mqp: Glycoside Hydrolase BT_1002
Protein crystallography data
The structure of Glycoside Hydrolase BT_1002, PDB code: 5mqp
was solved by
A.Basle,
D.Ndeh,
A.Rogowski,
A.Cartmell,
A.S.Luis,
I.Venditto,
A.Labourel,
H.J.Gilbert,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.16 /
2.00
|
|
Space group
|
I 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
208.230,
133.238,
224.077,
90.00,
97.67,
90.00
|
|
R / Rfree (%)
|
18.3 /
22.4
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Glycoside Hydrolase BT_1002
(pdb code 5mqp). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Glycoside Hydrolase BT_1002, PDB code: 5mqp:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 1 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca701
b:34.0
occ:1.00
|
O
|
A:LEU257
|
2.3
|
33.9
|
1.0
|
|
O
|
A:HOH1006
|
2.3
|
41.6
|
1.0
|
|
O
|
A:HOH1140
|
2.3
|
26.1
|
1.0
|
|
O
|
A:ARG150
|
2.4
|
30.0
|
1.0
|
|
OE1
|
A:GLU263
|
2.5
|
30.8
|
1.0
|
|
OD1
|
A:ASP259
|
2.5
|
38.2
|
1.0
|
|
OE2
|
A:GLU263
|
2.6
|
34.5
|
1.0
|
|
CD
|
A:GLU263
|
2.8
|
36.0
|
1.0
|
|
CG
|
A:ASP259
|
3.4
|
45.4
|
1.0
|
|
C
|
A:LEU257
|
3.5
|
32.5
|
1.0
|
|
C
|
A:ARG150
|
3.6
|
33.1
|
1.0
|
|
OD2
|
A:ASP259
|
3.8
|
44.9
|
1.0
|
|
N
|
A:ARG150
|
4.1
|
32.7
|
1.0
|
|
N
|
A:ASP259
|
4.1
|
38.1
|
1.0
|
|
O
|
A:HOH964
|
4.2
|
33.1
|
1.0
|
|
CG
|
A:GLU263
|
4.4
|
33.4
|
1.0
|
|
CA
|
A:LEU257
|
4.4
|
31.8
|
1.0
|
|
O
|
A:ASP151
|
4.4
|
34.7
|
1.0
|
|
CA
|
A:ARG150
|
4.4
|
32.0
|
1.0
|
|
N
|
A:LEU258
|
4.5
|
32.2
|
1.0
|
|
CB
|
A:LEU257
|
4.5
|
34.2
|
1.0
|
|
N
|
A:ASP151
|
4.5
|
32.8
|
1.0
|
|
C
|
A:ASP151
|
4.6
|
32.8
|
1.0
|
|
CA
|
A:LEU258
|
4.6
|
34.2
|
1.0
|
|
CA
|
A:ASP151
|
4.6
|
33.1
|
1.0
|
|
CB
|
A:ASP259
|
4.6
|
41.4
|
1.0
|
|
CG2
|
A:VAL260
|
4.7
|
43.9
|
1.0
|
|
N
|
A:VAL260
|
4.7
|
38.8
|
1.0
|
|
C
|
A:LEU258
|
4.8
|
36.9
|
1.0
|
|
CA
|
A:ASP259
|
4.8
|
41.8
|
1.0
|
|
O
|
A:HOH1121
|
4.8
|
43.6
|
1.0
|
|
NH1
|
A:ARG180
|
5.0
|
60.9
|
1.0
|
|
Calcium binding site 2 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 2 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca701
b:40.1
occ:1.00
|
O
|
B:ARG150
|
2.3
|
35.5
|
1.0
|
|
O
|
B:LEU257
|
2.4
|
41.8
|
1.0
|
|
OE1
|
B:GLU263
|
2.4
|
36.9
|
1.0
|
|
O
|
B:HOH1140
|
2.5
|
37.3
|
1.0
|
|
OD1
|
B:ASP259
|
2.5
|
48.4
|
1.0
|
|
O
|
B:HOH977
|
2.5
|
40.6
|
1.0
|
|
OE2
|
B:GLU263
|
2.5
|
40.3
|
1.0
|
|
CD
|
B:GLU263
|
2.8
|
41.4
|
1.0
|
|
CG
|
B:ASP259
|
3.4
|
51.2
|
1.0
|
|
C
|
B:ARG150
|
3.5
|
33.6
|
1.0
|
|
C
|
B:LEU257
|
3.6
|
37.9
|
1.0
|
|
OD2
|
B:ASP259
|
3.7
|
54.2
|
1.0
|
|
N
|
B:ARG150
|
4.0
|
30.8
|
1.0
|
|
N
|
B:ASP259
|
4.0
|
46.6
|
1.0
|
|
O
|
B:HOH962
|
4.2
|
34.1
|
1.0
|
|
CG
|
B:GLU263
|
4.4
|
40.0
|
1.0
|
|
CA
|
B:ARG150
|
4.4
|
34.7
|
1.0
|
|
CA
|
B:LEU257
|
4.4
|
41.5
|
1.0
|
|
O
|
B:ASP151
|
4.5
|
40.6
|
1.0
|
|
N
|
B:ASP151
|
4.5
|
37.3
|
1.0
|
|
N
|
B:LEU258
|
4.5
|
37.1
|
1.0
|
|
CB
|
B:LEU257
|
4.5
|
37.9
|
1.0
|
|
CA
|
B:LEU258
|
4.6
|
40.0
|
1.0
|
|
CB
|
B:ASP259
|
4.6
|
49.2
|
1.0
|
|
CG2
|
B:VAL260
|
4.6
|
43.7
|
1.0
|
|
C
|
B:ASP151
|
4.6
|
40.3
|
1.0
|
|
CA
|
B:ASP151
|
4.6
|
39.6
|
1.0
|
|
N
|
B:VAL260
|
4.7
|
45.2
|
1.0
|
|
CA
|
B:ASP259
|
4.7
|
47.8
|
1.0
|
|
C
|
B:LEU258
|
4.7
|
44.3
|
1.0
|
|
C
|
B:ALA149
|
4.9
|
32.8
|
1.0
|
|
Calcium binding site 3 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 3 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca702
b:51.1
occ:1.00
|
OE2
|
B:GLU21
|
2.2
|
45.8
|
1.0
|
|
O
|
B:GLY64
|
2.2
|
32.1
|
1.0
|
|
O
|
B:HOH979
|
2.4
|
39.8
|
1.0
|
|
O
|
B:HOH1083
|
2.4
|
53.9
|
1.0
|
|
O
|
B:ARG60
|
2.5
|
39.5
|
1.0
|
|
O
|
B:ARG62
|
2.7
|
36.0
|
1.0
|
|
CD
|
B:GLU21
|
3.2
|
49.8
|
1.0
|
|
C
|
B:GLY64
|
3.4
|
31.0
|
1.0
|
|
C
|
B:ARG60
|
3.6
|
37.2
|
1.0
|
|
OE1
|
B:GLU21
|
3.6
|
54.4
|
1.0
|
|
C
|
B:ARG62
|
3.8
|
40.2
|
1.0
|
|
N
|
B:GLY64
|
3.9
|
33.5
|
1.0
|
|
C
|
B:GLY63
|
4.1
|
37.9
|
1.0
|
|
C
|
B:VAL61
|
4.1
|
37.2
|
1.0
|
|
CA
|
B:GLY64
|
4.2
|
32.9
|
1.0
|
|
N
|
B:ARG62
|
4.3
|
41.9
|
1.0
|
|
O
|
B:VAL61
|
4.3
|
32.6
|
1.0
|
|
CG
|
B:GLU21
|
4.3
|
48.3
|
1.0
|
|
N
|
B:ILE65
|
4.4
|
28.2
|
1.0
|
|
CA
|
B:ARG60
|
4.4
|
37.0
|
1.0
|
|
N
|
B:VAL61
|
4.5
|
35.3
|
1.0
|
|
O
|
B:GLY63
|
4.5
|
35.9
|
1.0
|
|
CA
|
B:ILE65
|
4.5
|
25.7
|
1.0
|
|
CA
|
B:VAL61
|
4.6
|
36.3
|
1.0
|
|
CA
|
B:GLY63
|
4.6
|
37.7
|
1.0
|
|
CA
|
B:ARG62
|
4.7
|
44.2
|
1.0
|
|
N
|
B:GLY63
|
4.7
|
38.3
|
1.0
|
|
CB
|
B:ARG60
|
4.9
|
38.5
|
1.0
|
|
Calcium binding site 4 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 4 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca701
b:35.4
occ:1.00
|
O
|
C:HOH804
|
2.3
|
36.2
|
1.0
|
|
O
|
C:ARG150
|
2.3
|
36.6
|
1.0
|
|
O
|
C:LEU257
|
2.4
|
37.6
|
1.0
|
|
OE1
|
C:GLU263
|
2.4
|
36.9
|
1.0
|
|
O
|
C:HOH1105
|
2.5
|
37.2
|
1.0
|
|
OE2
|
C:GLU263
|
2.6
|
35.0
|
1.0
|
|
OD1
|
C:ASP259
|
2.6
|
39.6
|
1.0
|
|
CD
|
C:GLU263
|
2.8
|
35.7
|
1.0
|
|
CG
|
C:ASP259
|
3.4
|
42.4
|
1.0
|
|
C
|
C:ARG150
|
3.5
|
37.6
|
1.0
|
|
C
|
C:LEU257
|
3.6
|
34.7
|
1.0
|
|
OD2
|
C:ASP259
|
3.8
|
48.2
|
1.0
|
|
N
|
C:ASP259
|
4.0
|
39.9
|
1.0
|
|
N
|
C:ARG150
|
4.0
|
36.1
|
1.0
|
|
O
|
C:HOH1033
|
4.2
|
35.6
|
1.0
|
|
NH2
|
C:ARG180
|
4.4
|
68.6
|
1.0
|
|
CG
|
C:GLU263
|
4.4
|
32.7
|
1.0
|
|
CA
|
C:ARG150
|
4.4
|
37.6
|
1.0
|
|
CA
|
C:LEU257
|
4.4
|
35.9
|
1.0
|
|
CB
|
C:LEU257
|
4.4
|
37.4
|
1.0
|
|
O
|
C:ASP151
|
4.4
|
40.4
|
1.0
|
|
N
|
C:ASP151
|
4.5
|
37.0
|
1.0
|
|
N
|
C:LEU258
|
4.5
|
34.1
|
1.0
|
|
CA
|
C:LEU258
|
4.5
|
36.4
|
1.0
|
|
C
|
C:ASP151
|
4.5
|
42.9
|
1.0
|
|
CB
|
C:ASP259
|
4.6
|
39.7
|
1.0
|
|
CA
|
C:ASP151
|
4.6
|
38.7
|
1.0
|
|
CA
|
C:ASP259
|
4.7
|
40.4
|
1.0
|
|
C
|
C:LEU258
|
4.7
|
38.2
|
1.0
|
|
N
|
C:VAL260
|
4.8
|
41.1
|
1.0
|
|
CG2
|
C:VAL260
|
4.8
|
44.7
|
1.0
|
|
C
|
C:ALA149
|
4.9
|
38.9
|
1.0
|
|
Calcium binding site 5 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 5 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca701
b:36.7
occ:1.00
|
O
|
D:HOH1107
|
2.2
|
27.8
|
1.0
|
|
O
|
D:ARG150
|
2.3
|
31.2
|
1.0
|
|
O
|
D:HOH834
|
2.3
|
39.4
|
1.0
|
|
O
|
D:LEU257
|
2.4
|
32.4
|
1.0
|
|
OD1
|
D:ASP259
|
2.5
|
38.1
|
1.0
|
|
OE1
|
D:GLU263
|
2.5
|
35.8
|
1.0
|
|
OE2
|
D:GLU263
|
2.6
|
34.0
|
1.0
|
|
CD
|
D:GLU263
|
2.9
|
36.8
|
1.0
|
|
CG
|
D:ASP259
|
3.5
|
43.6
|
1.0
|
|
C
|
D:ARG150
|
3.5
|
31.2
|
1.0
|
|
C
|
D:LEU257
|
3.6
|
33.0
|
1.0
|
|
OD2
|
D:ASP259
|
3.9
|
45.9
|
1.0
|
|
N
|
D:ARG150
|
4.0
|
30.9
|
1.0
|
|
N
|
D:ASP259
|
4.0
|
41.2
|
1.0
|
|
O
|
D:HOH904
|
4.1
|
31.5
|
1.0
|
|
O
|
D:ASP151
|
4.3
|
37.9
|
1.0
|
|
CA
|
D:ARG150
|
4.4
|
29.6
|
1.0
|
|
CG
|
D:GLU263
|
4.4
|
37.8
|
1.0
|
|
CA
|
D:LEU257
|
4.4
|
33.5
|
1.0
|
|
N
|
D:ASP151
|
4.5
|
29.5
|
1.0
|
|
CG2
|
D:VAL260
|
4.5
|
49.6
|
1.0
|
|
CB
|
D:LEU257
|
4.5
|
37.3
|
1.0
|
|
C
|
D:ASP151
|
4.5
|
35.5
|
1.0
|
|
N
|
D:LEU258
|
4.6
|
35.2
|
1.0
|
|
CA
|
D:ASP151
|
4.6
|
33.4
|
1.0
|
|
CA
|
D:LEU258
|
4.6
|
35.7
|
1.0
|
|
NH2
|
D:ARG180
|
4.7
|
81.1
|
1.0
|
|
CB
|
D:ASP259
|
4.7
|
42.9
|
1.0
|
|
N
|
D:VAL260
|
4.8
|
49.3
|
1.0
|
|
CA
|
D:ASP259
|
4.8
|
46.0
|
1.0
|
|
C
|
D:LEU258
|
4.8
|
40.6
|
1.0
|
|
C
|
D:ALA149
|
5.0
|
30.2
|
1.0
|
|
Calcium binding site 6 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 6 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca701
b:39.5
occ:1.00
|
O
|
E:HOH2147
|
2.2
|
44.7
|
1.0
|
|
O
|
E:ARG150
|
2.2
|
35.8
|
1.0
|
|
O
|
E:HOH2266
|
2.3
|
39.1
|
1.0
|
|
O
|
E:LEU257
|
2.3
|
43.5
|
1.0
|
|
OE2
|
E:GLU263
|
2.5
|
40.4
|
1.0
|
|
OE1
|
E:GLU263
|
2.5
|
38.4
|
1.0
|
|
OD1
|
E:ASP259
|
2.7
|
53.4
|
1.0
|
|
CD
|
E:GLU263
|
2.8
|
39.2
|
1.0
|
|
C
|
E:ARG150
|
3.4
|
38.7
|
1.0
|
|
CG
|
E:ASP259
|
3.5
|
48.9
|
1.0
|
|
C
|
E:LEU257
|
3.6
|
39.3
|
1.0
|
|
N
|
E:ARG150
|
3.9
|
38.2
|
1.0
|
|
OD2
|
E:ASP259
|
3.9
|
48.4
|
1.0
|
|
O
|
E:HOH2194
|
4.1
|
41.4
|
1.0
|
|
O
|
E:ASP151
|
4.1
|
42.7
|
1.0
|
|
N
|
E:ASP259
|
4.2
|
46.1
|
1.0
|
|
CA
|
E:ARG150
|
4.3
|
37.6
|
1.0
|
|
CA
|
E:LEU257
|
4.3
|
39.4
|
1.0
|
|
CG
|
E:GLU263
|
4.3
|
37.9
|
1.0
|
|
N
|
E:ASP151
|
4.4
|
37.3
|
1.0
|
|
CB
|
E:LEU257
|
4.4
|
39.9
|
1.0
|
|
C
|
E:ASP151
|
4.4
|
41.0
|
1.0
|
|
CA
|
E:ASP151
|
4.5
|
39.2
|
1.0
|
|
N
|
E:LEU258
|
4.5
|
39.1
|
1.0
|
|
CA
|
E:LEU258
|
4.7
|
41.6
|
1.0
|
|
CB
|
E:ASP259
|
4.7
|
48.6
|
1.0
|
|
N
|
E:VAL260
|
4.8
|
48.7
|
1.0
|
|
CA
|
E:ASP259
|
4.9
|
47.9
|
1.0
|
|
C
|
E:ALA149
|
4.9
|
38.9
|
1.0
|
|
C
|
E:LEU258
|
4.9
|
43.0
|
1.0
|
|
Calcium binding site 7 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 7 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca702
b:54.7
occ:1.00
|
O
|
E:HOH2291
|
2.2
|
38.1
|
1.0
|
|
OE2
|
E:GLU21
|
2.3
|
45.5
|
1.0
|
|
O
|
E:GLY64
|
2.3
|
41.3
|
1.0
|
|
O
|
E:ARG60
|
2.3
|
50.3
|
1.0
|
|
O
|
E:ARG62
|
2.3
|
47.6
|
1.0
|
|
O
|
E:HOH2247
|
2.4
|
46.9
|
1.0
|
|
CD
|
E:GLU21
|
3.1
|
53.4
|
1.0
|
|
OE1
|
E:GLU21
|
3.3
|
50.9
|
1.0
|
|
C
|
E:ARG60
|
3.4
|
52.3
|
1.0
|
|
C
|
E:GLY64
|
3.5
|
43.1
|
1.0
|
|
C
|
E:ARG62
|
3.5
|
53.8
|
1.0
|
|
N
|
E:GLY64
|
3.9
|
52.4
|
1.0
|
|
C
|
E:VAL61
|
4.1
|
47.9
|
1.0
|
|
O
|
E:VAL61
|
4.2
|
48.5
|
1.0
|
|
CA
|
E:ARG60
|
4.2
|
53.2
|
1.0
|
|
N
|
E:ARG62
|
4.2
|
56.2
|
1.0
|
|
C
|
E:GLY63
|
4.2
|
50.4
|
1.0
|
|
CA
|
E:GLY64
|
4.3
|
48.3
|
1.0
|
|
N
|
E:GLY63
|
4.4
|
51.0
|
1.0
|
|
CA
|
E:ARG62
|
4.4
|
59.1
|
1.0
|
|
N
|
E:ILE65
|
4.5
|
43.7
|
1.0
|
|
N
|
E:VAL61
|
4.5
|
46.1
|
1.0
|
|
CA
|
E:GLY63
|
4.5
|
52.0
|
1.0
|
|
CG
|
E:GLU21
|
4.6
|
46.9
|
1.0
|
|
CB
|
E:ARG60
|
4.6
|
53.4
|
1.0
|
|
CA
|
E:VAL61
|
4.6
|
46.9
|
1.0
|
|
CA
|
E:ILE65
|
4.6
|
39.8
|
1.0
|
|
O
|
E:GLY63
|
4.9
|
46.0
|
1.0
|
|
Calcium binding site 8 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 8 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca701
b:41.7
occ:1.00
|
O
|
F:LEU257
|
2.3
|
39.0
|
1.0
|
|
OE2
|
F:GLU263
|
2.3
|
41.9
|
1.0
|
|
O
|
F:HOH965
|
2.3
|
45.5
|
1.0
|
|
OE1
|
F:GLU263
|
2.3
|
39.2
|
1.0
|
|
O
|
F:ARG150
|
2.4
|
41.9
|
1.0
|
|
O
|
F:HOH1022
|
2.5
|
34.8
|
1.0
|
|
OD1
|
F:ASP259
|
2.6
|
42.0
|
1.0
|
|
CD
|
F:GLU263
|
2.7
|
41.5
|
1.0
|
|
CG
|
F:ASP259
|
3.5
|
45.7
|
1.0
|
|
C
|
F:LEU257
|
3.5
|
39.2
|
1.0
|
|
C
|
F:ARG150
|
3.6
|
43.0
|
1.0
|
|
OD2
|
F:ASP259
|
3.9
|
44.4
|
1.0
|
|
N
|
F:ASP259
|
4.0
|
46.3
|
1.0
|
|
N
|
F:ARG150
|
4.0
|
41.6
|
1.0
|
|
O
|
F:HOH841
|
4.1
|
42.1
|
1.0
|
|
CG
|
F:GLU263
|
4.2
|
38.4
|
1.0
|
|
O
|
F:ASP151
|
4.4
|
45.7
|
1.0
|
|
CA
|
F:LEU257
|
4.4
|
37.8
|
1.0
|
|
CA
|
F:ARG150
|
4.4
|
41.8
|
1.0
|
|
N
|
F:LEU258
|
4.5
|
39.8
|
1.0
|
|
N
|
F:ASP151
|
4.5
|
42.1
|
1.0
|
|
CB
|
F:LEU257
|
4.6
|
38.5
|
1.0
|
|
CA
|
F:LEU258
|
4.6
|
41.4
|
1.0
|
|
C
|
F:ASP151
|
4.6
|
42.8
|
1.0
|
|
CB
|
F:ASP259
|
4.7
|
44.3
|
1.0
|
|
N
|
F:VAL260
|
4.7
|
46.0
|
1.0
|
|
CA
|
F:ASP151
|
4.7
|
39.8
|
1.0
|
|
C
|
F:LEU258
|
4.8
|
42.7
|
1.0
|
|
CA
|
F:ASP259
|
4.8
|
46.6
|
1.0
|
|
CG2
|
F:VAL260
|
4.9
|
51.7
|
1.0
|
|
C
|
F:ALA149
|
5.0
|
41.6
|
1.0
|
|
Calcium binding site 9 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 9 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca701
b:43.0
occ:1.00
|
O
|
G:LEU257
|
2.2
|
33.2
|
1.0
|
|
O
|
G:HOH837
|
2.3
|
39.0
|
1.0
|
|
OE2
|
G:GLU263
|
2.3
|
54.8
|
1.0
|
|
O
|
G:ARG150
|
2.4
|
51.4
|
1.0
|
|
OE1
|
G:GLU263
|
2.5
|
51.6
|
1.0
|
|
O
|
G:HOH989
|
2.5
|
44.0
|
1.0
|
|
OD1
|
G:ASP259
|
2.6
|
49.1
|
1.0
|
|
CD
|
G:GLU263
|
2.7
|
53.9
|
1.0
|
|
C
|
G:LEU257
|
3.4
|
39.1
|
1.0
|
|
CG
|
G:ASP259
|
3.6
|
52.2
|
1.0
|
|
C
|
G:ARG150
|
3.7
|
50.3
|
1.0
|
|
N
|
G:ASP259
|
3.9
|
46.2
|
1.0
|
|
OD2
|
G:ASP259
|
4.0
|
52.5
|
1.0
|
|
O
|
G:HOH812
|
4.1
|
37.4
|
1.0
|
|
N
|
G:ARG150
|
4.1
|
43.3
|
1.0
|
|
CG
|
G:GLU263
|
4.2
|
47.6
|
1.0
|
|
CA
|
G:LEU257
|
4.3
|
43.2
|
1.0
|
|
N
|
G:LEU258
|
4.4
|
41.0
|
1.0
|
|
O
|
G:ASP151
|
4.5
|
42.1
|
1.0
|
|
CB
|
G:LEU257
|
4.5
|
45.6
|
1.0
|
|
CA
|
G:LEU258
|
4.5
|
43.0
|
1.0
|
|
CA
|
G:ARG150
|
4.5
|
45.0
|
1.0
|
|
N
|
G:ASP151
|
4.6
|
48.8
|
1.0
|
|
C
|
G:ASP151
|
4.6
|
42.2
|
1.0
|
|
CA
|
G:ASP151
|
4.7
|
44.4
|
1.0
|
|
C
|
G:LEU258
|
4.7
|
43.6
|
1.0
|
|
CA
|
G:ASP259
|
4.7
|
48.7
|
1.0
|
|
N
|
G:VAL260
|
4.7
|
43.6
|
1.0
|
|
CB
|
G:ASP259
|
4.7
|
49.6
|
1.0
|
|
CG2
|
G:VAL260
|
4.9
|
51.0
|
1.0
|
|
Calcium binding site 10 out
of 10 in 5mqp
Go back to
Calcium Binding Sites List in 5mqp
Calcium binding site 10 out
of 10 in the Glycoside Hydrolase BT_1002
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Glycoside Hydrolase BT_1002 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca701
b:42.4
occ:1.00
|
O
|
H:HOH1040
|
2.2
|
33.5
|
1.0
|
|
O
|
H:LEU257
|
2.2
|
41.7
|
1.0
|
|
O
|
H:HOH952
|
2.3
|
43.3
|
1.0
|
|
O
|
H:ARG150
|
2.4
|
45.6
|
1.0
|
|
OD1
|
H:ASP259
|
2.4
|
59.7
|
1.0
|
|
OE1
|
H:GLU263
|
2.6
|
40.8
|
1.0
|
|
OE2
|
H:GLU263
|
2.6
|
43.4
|
1.0
|
|
CD
|
H:GLU263
|
2.9
|
47.4
|
1.0
|
|
CG
|
H:ASP259
|
3.4
|
56.2
|
1.0
|
|
C
|
H:LEU257
|
3.5
|
39.2
|
1.0
|
|
C
|
H:ARG150
|
3.6
|
44.0
|
1.0
|
|
OD2
|
H:ASP259
|
3.9
|
55.7
|
1.0
|
|
N
|
H:ASP259
|
3.9
|
49.7
|
1.0
|
|
N
|
H:ARG150
|
4.1
|
39.9
|
1.0
|
|
O
|
H:HOH1012
|
4.2
|
41.5
|
1.0
|
|
CA
|
H:LEU257
|
4.4
|
39.5
|
1.0
|
|
N
|
H:LEU258
|
4.4
|
42.8
|
1.0
|
|
CG
|
H:GLU263
|
4.4
|
47.1
|
1.0
|
|
CA
|
H:ARG150
|
4.5
|
43.3
|
1.0
|
|
CB
|
H:LEU257
|
4.5
|
43.3
|
1.0
|
|
CA
|
H:LEU258
|
4.5
|
46.1
|
1.0
|
|
N
|
H:ASP151
|
4.6
|
46.9
|
1.0
|
|
CB
|
H:ASP259
|
4.6
|
48.5
|
1.0
|
|
C
|
H:LEU258
|
4.6
|
47.5
|
1.0
|
|
O
|
H:ASP151
|
4.7
|
58.8
|
1.0
|
|
NH2
|
H:ARG180
|
4.7
|
82.0
|
1.0
|
|
CA
|
H:ASP259
|
4.7
|
49.6
|
1.0
|
|
CA
|
H:ASP151
|
4.8
|
47.5
|
1.0
|
|
C
|
H:ASP151
|
4.8
|
49.4
|
1.0
|
|
CG2
|
H:VAL260
|
4.8
|
56.8
|
1.0
|
|
N
|
H:VAL260
|
4.9
|
51.5
|
1.0
|
|
C
|
H:ALA149
|
5.0
|
38.3
|
1.0
|
|
Reference:
D.Ndeh,
A.Rogowski,
A.Cartmell,
A.S.Luis,
A.Basle,
J.Gray,
I.Venditto,
B.Briggs,
X.Zhang,
A.Labourel,
N.Terrapon,
F.Buffetto,
S.Nepogodiev,
Y.Xiao,
R.A.Field,
Y.Zhu,
M.A.Oneil,
B.R.Urbanowicz,
W.S.York,
G.J.Davies,
D.W.Abbott,
M.-C.Ralet,
E.C.Martens,
B.Henrissat,
H.J.Gilbert.
The Most Complex Carbohydrate Known Is Degraded in the Human Gut By Single Organisms and Not Bacterial Consortia To Be Published.
Page generated: Mon Jul 15 08:34:27 2024
|
