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Calcium in PDB 5myc: Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910

Enzymatic activity of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910

All present enzymatic activity of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910, PDB code: 5myc was solved by L.M.Stevers, R.M.J.M.De Vries, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.85 / 1.46
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.517, 112.411, 62.689, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.9

Other elements in 5myc:

The structure of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910 (pdb code 5myc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910, PDB code: 5myc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5myc

Go back to Calcium Binding Sites List in 5myc
Calcium binding site 1 out of 2 in the Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:23.0
occ:1.00
O A:HOH651 2.3 36.2 1.0
OE2 A:GLU2 2.4 19.1 1.0
O A:HOH491 2.4 18.5 1.0
O A:HOH692 2.6 38.0 1.0
CD A:GLU2 3.5 17.4 1.0
OE1 A:GLU2 3.8 17.9 1.0
O A:HOH609 4.3 15.8 1.0
O A:HOH774 4.5 18.2 1.0
CG A:GLU2 4.7 14.3 1.0
CA A:GLU2 4.9 13.1 1.0
N A:ARG3 5.0 12.9 1.0

Calcium binding site 2 out of 2 in 5myc

Go back to Calcium Binding Sites List in 5myc
Calcium binding site 2 out of 2 in the Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human 14-3-3 Sigma in Complex with LRRK2 Peptide PS910 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:19.2
occ:1.00
O A:HOH570 2.3 27.5 1.0
OE2 A:GLU188 2.4 20.7 1.0
CD A:GLU188 3.4 16.4 1.0
CG A:GLU188 3.8 15.1 1.0
OE1 A:GLU188 4.5 19.6 1.0
O A:HOH759 4.7 33.6 1.0

Reference:

L.M.Stevers, R.M.De Vries, R.G.Doveston, L.G.Milroy, L.Brunsveld, C.Ottmann. Structural Interface Between LRRK2 and 14-3-3 Protein. Biochem. J. V. 474 1273 2017.
ISSN: ESSN 1470-8728
PubMed: 28202711
DOI: 10.1042/BCJ20161078
Page generated: Sat Dec 12 05:39:09 2020

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