Calcium in PDB 5o1u: Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+

The structure of Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+, PDB code: 5o1u was solved by G.Witte, D.Drexler, M.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.11 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.310, 106.790, 134.120, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 20.4

The structure of Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+ also contains other interesting chemical elements:

Manganese

(Mn)

6 atoms

The binding sites of Calcium atom in the Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+ (pdb code 5o1u). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+, PDB code: 5o1u:

Calcium binding site 1 out of 1 in the Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Wildtype T.Maritima Pde (TM1595) with Amp and MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:71.7 occ:1.00 O B:HOH697 2.4 46.6 1.0 O B:GLY282 2.6 44.5 1.0 O B:HOH521 3.1 30.0 1.0 O B:HOH712 3.5 45.3 1.0 C B:GLY282 3.7 42.6 1.0 OD2 B:ASP85 4.0 60.1 1.0 CA B:GLY282 4.1 37.1 1.0 CG B:ASP85 4.5 56.0 1.0 OD1 B:ASP85 4.6 60.5 1.0 O B:HOH561 4.6 32.4 1.0 O B:HOH687 4.7 59.4 1.0 O B:HOH556 4.8 48.7 1.0 N B:GLY283 4.8 38.4 1.0 O B:HOH549 4.8 43.8 1.0

D.J.Drexler, M.Muller, C.A.Rojas-Cordova, A.M.Bandera, G.Witte. Structural and Biophysical Analysis of the Soluble Dhh/DHHA1-Type Phosphodiesterase TM1595 From Thermotoga Maritima. Structure V. 25 1887 2017.
ISSN: ISSN 1878-4186
PubMed: 29107484
DOI: 10.1016/J.STR.2017.10.001