Calcium in PDB 5o6n: High Pressure Flash Cooled Concanavalin A

The structure of High Pressure Flash Cooled Concanavalin A, PDB code: 5o6n was solved by Y.Thielmann, D.Quirnheim Pais, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.23 / 1.35
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.260, 86.230, 89.020, 90.00, 90.00, 90.00
R / Rfree (%)	13.3 / 16.4

The structure of High Pressure Flash Cooled Concanavalin A also contains other interesting chemical elements:

Manganese	(Mn)	1 atom
Chlorine	(Cl)	2 atoms
Sodium	(Na)	1 atom

The binding sites of Calcium atom in the High Pressure Flash Cooled Concanavalin A (pdb code 5o6n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the High Pressure Flash Cooled Concanavalin A, PDB code: 5o6n:

Calcium binding site 1 out of 1 in the High Pressure Flash Cooled Concanavalin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High Pressure Flash Cooled Concanavalin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:9.2 occ:0.94 OD1 A:ASN14 2.3 11.7 1.0 O A:TYR12 2.4 11.9 1.0 O A:HOH506 2.4 10.8 1.0 OD2 A:ASP19 2.4 10.7 1.0 O A:HOH556 2.4 11.3 1.0 OD1 A:ASP10 2.5 10.7 1.0 OD2 A:ASP10 2.5 10.4 1.0 CG A:ASP10 2.8 10.1 1.0 CG A:ASN14 3.5 10.5 1.0 CG A:ASP19 3.5 10.5 1.0 C A:TYR12 3.6 11.1 1.0 OD1 A:ASP19 3.9 10.7 1.0 N A:ASN14 4.0 10.7 1.0 CB A:ASN14 4.2 10.9 1.0 MN A:MN302 4.2 9.8 0.7 CB A:ASP10 4.3 10.0 1.0 CA A:TYR12 4.4 9.8 1.0 N A:TYR12 4.4 10.3 1.0 O A:HOH462 4.5 10.5 1.0 ND2 A:ASN14 4.5 11.2 1.0 CE1 A:HIS24 4.5 10.1 1.0 N A:PRO13 4.6 11.4 1.0 CB A:TYR12 4.6 10.1 1.0 CA A:PRO13 4.6 11.2 1.0 C A:PRO13 4.7 11.4 1.0 O A:ASP208 4.7 10.0 1.0 CB A:ASP19 4.7 11.2 1.0 CA A:ASN14 4.7 10.9 1.0 OD2 A:ASP208 4.7 12.0 1.0 CB A:ARG228 4.8 10.9 1.0 O A:ARG228 4.8 11.1 1.0 CA A:ARG228 4.8 10.1 1.0 NE2 A:HIS24 4.9 10.8 1.0

D.Quirnheim Pais, B.Rathmann, J.Koepke, C.Tomova, P.Wurzinger, Y.Thielmann. A Standardized Technique For High-Pressure Cooling of Protein Crystals. Acta Crystallogr D Struct V. 73 997 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 29199979
DOI: 10.1107/S2059798317016357