Calcium in PDB 5odu: Plla Lectin, Monosaccharide Complex
Protein crystallography data
The structure of Plla Lectin, Monosaccharide Complex, PDB code: 5odu
was solved by
J.Koehnke,
A.Sikandar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
51.67 /
1.56
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
62.904,
103.342,
76.086,
90.00,
93.05,
90.00
|
|
R / Rfree (%)
|
19.8 /
22.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Plla Lectin, Monosaccharide Complex
(pdb code 5odu). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Plla Lectin, Monosaccharide Complex, PDB code: 5odu:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 1 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:18.3
occ:1.00
|
O
|
A:THR100
|
2.3
|
22.7
|
1.0
|
|
OD1
|
A:ASN104
|
2.4
|
16.5
|
1.0
|
|
OD2
|
A:ASP96
|
2.4
|
17.2
|
1.0
|
|
O
|
A:TYR38
|
2.4
|
20.9
|
1.0
|
|
OD1
|
A:ASP103
|
2.4
|
22.7
|
1.0
|
|
O3
|
A:AMG201
|
2.5
|
18.1
|
1.0
|
|
O4
|
A:AMG201
|
2.5
|
19.1
|
1.0
|
|
C4
|
A:AMG201
|
3.4
|
23.0
|
1.0
|
|
C
|
A:TYR38
|
3.4
|
15.8
|
1.0
|
|
CG
|
A:ASN104
|
3.4
|
15.6
|
1.0
|
|
C3
|
A:AMG201
|
3.4
|
22.7
|
1.0
|
|
CG
|
A:ASP103
|
3.4
|
20.2
|
1.0
|
|
CG
|
A:ASP96
|
3.4
|
16.9
|
1.0
|
|
C
|
A:THR100
|
3.5
|
19.7
|
1.0
|
|
OG1
|
A:THR100
|
3.7
|
19.9
|
1.0
|
|
OD2
|
A:ASP103
|
3.8
|
22.9
|
1.0
|
|
ND2
|
A:ASN104
|
3.8
|
19.1
|
1.0
|
|
OD1
|
A:ASP96
|
3.8
|
15.4
|
1.0
|
|
CB
|
A:THR100
|
4.0
|
16.1
|
1.0
|
|
CA
|
A:TYR38
|
4.0
|
19.5
|
1.0
|
|
C2
|
A:AMG201
|
4.1
|
23.5
|
1.0
|
|
CB
|
A:TYR38
|
4.3
|
15.0
|
1.0
|
|
CA
|
A:THR100
|
4.3
|
18.3
|
1.0
|
|
N
|
A:PHE101
|
4.4
|
24.8
|
1.0
|
|
N
|
A:GLY39
|
4.4
|
16.6
|
1.0
|
|
CA
|
A:PHE101
|
4.5
|
19.9
|
1.0
|
|
N
|
A:ASN104
|
4.6
|
22.7
|
1.0
|
|
C
|
A:ASP103
|
4.7
|
20.6
|
1.0
|
|
CA
|
A:GLY39
|
4.7
|
18.7
|
1.0
|
|
CB
|
A:ASP96
|
4.7
|
18.5
|
1.0
|
|
CB
|
A:ASN104
|
4.7
|
12.4
|
1.0
|
|
CB
|
A:ASP103
|
4.7
|
21.2
|
1.0
|
|
C5
|
A:AMG201
|
4.8
|
22.7
|
1.0
|
|
N
|
A:ASP103
|
4.8
|
22.7
|
1.0
|
|
O2
|
A:AMG201
|
4.9
|
22.8
|
1.0
|
|
C
|
A:PHE101
|
4.9
|
16.7
|
1.0
|
|
O
|
A:ASP103
|
5.0
|
17.7
|
1.0
|
|
CA
|
A:ASP103
|
5.0
|
17.4
|
1.0
|
|
CA
|
A:ASN104
|
5.0
|
19.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 2 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:12.8
occ:1.00
|
O
|
B:THR100
|
2.3
|
15.9
|
1.0
|
|
O
|
B:TYR38
|
2.4
|
14.6
|
1.0
|
|
OD2
|
B:ASP96
|
2.4
|
10.3
|
1.0
|
|
OD1
|
B:ASP103
|
2.4
|
13.3
|
1.0
|
|
OD1
|
B:ASN104
|
2.4
|
11.8
|
1.0
|
|
O3
|
B:AMG201
|
2.4
|
35.1
|
1.0
|
|
O4
|
B:AMG201
|
2.6
|
15.9
|
1.0
|
|
C3
|
B:AMG201
|
3.4
|
31.9
|
1.0
|
|
C
|
B:TYR38
|
3.4
|
13.7
|
1.0
|
|
C4
|
B:AMG201
|
3.4
|
27.1
|
1.0
|
|
CG
|
B:ASN104
|
3.4
|
10.5
|
1.0
|
|
CG
|
B:ASP103
|
3.4
|
17.3
|
1.0
|
|
CG
|
B:ASP96
|
3.4
|
9.3
|
1.0
|
|
OG1
|
B:THR100
|
3.5
|
17.1
|
1.0
|
|
C
|
B:THR100
|
3.5
|
16.7
|
1.0
|
|
OD2
|
B:ASP103
|
3.7
|
15.7
|
1.0
|
|
CB
|
B:THR100
|
3.8
|
18.1
|
1.0
|
|
ND2
|
B:ASN104
|
3.8
|
10.7
|
1.0
|
|
OD1
|
B:ASP96
|
3.8
|
12.6
|
1.0
|
|
CA
|
B:TYR38
|
4.0
|
13.1
|
1.0
|
|
C2
|
B:AMG201
|
4.1
|
34.1
|
1.0
|
|
CA
|
B:THR100
|
4.2
|
17.2
|
1.0
|
|
CB
|
B:TYR38
|
4.2
|
15.1
|
1.0
|
|
N
|
B:GLY39
|
4.4
|
12.1
|
1.0
|
|
N
|
B:PHE101
|
4.4
|
12.3
|
1.0
|
|
CA
|
B:PHE101
|
4.5
|
15.9
|
1.0
|
|
N
|
B:ASN104
|
4.7
|
14.2
|
1.0
|
|
C
|
B:ASP103
|
4.7
|
15.3
|
1.0
|
|
CA
|
B:GLY39
|
4.7
|
14.2
|
1.0
|
|
CB
|
B:ASP96
|
4.7
|
10.9
|
1.0
|
|
CB
|
B:ASN104
|
4.8
|
14.0
|
1.0
|
|
CB
|
B:ASP103
|
4.8
|
16.4
|
1.0
|
|
N
|
B:ASP103
|
4.9
|
18.5
|
1.0
|
|
C5
|
B:AMG201
|
4.9
|
26.9
|
1.0
|
|
O2
|
B:AMG201
|
4.9
|
26.9
|
1.0
|
|
O
|
B:ASP103
|
4.9
|
14.2
|
1.0
|
|
C
|
B:PHE101
|
5.0
|
15.9
|
1.0
|
|
CD1
|
B:TYR38
|
5.0
|
12.7
|
1.0
|
|
Calcium binding site 3 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 3 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:16.3
occ:1.00
|
O3
|
C:AMG201
|
2.3
|
14.1
|
1.0
|
|
O
|
C:TYR38
|
2.3
|
17.4
|
1.0
|
|
O
|
C:THR100
|
2.3
|
19.4
|
1.0
|
|
OD2
|
C:ASP96
|
2.4
|
13.6
|
1.0
|
|
OD1
|
C:ASN104
|
2.4
|
15.4
|
1.0
|
|
OD1
|
C:ASP103
|
2.5
|
18.4
|
1.0
|
|
O4
|
C:AMG201
|
2.6
|
15.5
|
1.0
|
|
C3
|
C:AMG201
|
3.3
|
12.7
|
1.0
|
|
C
|
C:TYR38
|
3.4
|
17.3
|
1.0
|
|
CG
|
C:ASN104
|
3.4
|
18.9
|
1.0
|
|
CG
|
C:ASP96
|
3.5
|
13.8
|
1.0
|
|
C4
|
C:AMG201
|
3.5
|
17.3
|
1.0
|
|
CG
|
C:ASP103
|
3.5
|
25.1
|
1.0
|
|
C
|
C:THR100
|
3.5
|
19.4
|
1.0
|
|
OG1
|
C:THR100
|
3.6
|
21.4
|
1.0
|
|
OD2
|
C:ASP103
|
3.8
|
23.5
|
1.0
|
|
ND2
|
C:ASN104
|
3.8
|
18.3
|
1.0
|
|
OD1
|
C:ASP96
|
3.8
|
18.0
|
1.0
|
|
CB
|
C:THR100
|
3.9
|
21.5
|
1.0
|
|
C2
|
C:AMG201
|
4.0
|
18.4
|
1.0
|
|
CA
|
C:TYR38
|
4.0
|
12.1
|
1.0
|
|
CB
|
C:TYR38
|
4.2
|
13.1
|
1.0
|
|
CA
|
C:THR100
|
4.3
|
18.0
|
1.0
|
|
N
|
C:PHE101
|
4.4
|
17.6
|
1.0
|
|
N
|
C:GLY39
|
4.4
|
19.7
|
1.0
|
|
CA
|
C:PHE101
|
4.5
|
13.9
|
1.0
|
|
N
|
C:ASN104
|
4.6
|
18.3
|
1.0
|
|
CA
|
C:GLY39
|
4.7
|
22.2
|
1.0
|
|
CB
|
C:ASP96
|
4.7
|
13.5
|
1.0
|
|
C
|
C:ASP103
|
4.8
|
18.6
|
1.0
|
|
CB
|
C:ASN104
|
4.8
|
19.0
|
1.0
|
|
O2
|
C:AMG201
|
4.8
|
21.1
|
1.0
|
|
CB
|
C:ASP103
|
4.8
|
22.5
|
1.0
|
|
N
|
C:ASP103
|
4.8
|
17.7
|
1.0
|
|
C5
|
C:AMG201
|
4.9
|
18.9
|
1.0
|
|
C
|
C:PHE101
|
4.9
|
15.1
|
1.0
|
|
CD1
|
C:TYR38
|
4.9
|
16.9
|
1.0
|
|
CA
|
C:ASN104
|
5.0
|
17.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 4 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca202
b:13.0
occ:1.00
|
O
|
D:TYR38
|
2.2
|
17.4
|
1.0
|
|
O
|
D:THR100
|
2.2
|
15.8
|
1.0
|
|
OD1
|
D:ASN104
|
2.3
|
15.7
|
1.0
|
|
OD2
|
D:ASP96
|
2.3
|
15.8
|
1.0
|
|
OD1
|
D:ASP103
|
2.4
|
15.2
|
1.0
|
|
O3
|
D:AMG201
|
2.4
|
18.0
|
1.0
|
|
O4
|
D:AMG201
|
2.6
|
14.4
|
1.0
|
|
C
|
D:TYR38
|
3.3
|
14.4
|
1.0
|
|
CG
|
D:ASN104
|
3.3
|
15.7
|
1.0
|
|
C3
|
D:AMG201
|
3.4
|
18.4
|
1.0
|
|
C4
|
D:AMG201
|
3.4
|
20.0
|
1.0
|
|
C
|
D:THR100
|
3.4
|
21.2
|
1.0
|
|
CG
|
D:ASP103
|
3.4
|
17.2
|
1.0
|
|
CG
|
D:ASP96
|
3.4
|
16.1
|
1.0
|
|
OG1
|
D:THR100
|
3.6
|
18.8
|
1.0
|
|
ND2
|
D:ASN104
|
3.7
|
14.3
|
1.0
|
|
CB
|
D:THR100
|
3.8
|
15.3
|
1.0
|
|
OD2
|
D:ASP103
|
3.8
|
18.3
|
1.0
|
|
CA
|
D:TYR38
|
3.9
|
15.9
|
1.0
|
|
OD1
|
D:ASP96
|
3.9
|
18.3
|
1.0
|
|
CB
|
D:TYR38
|
4.1
|
16.6
|
1.0
|
|
C2
|
D:AMG201
|
4.1
|
25.8
|
1.0
|
|
CA
|
D:THR100
|
4.2
|
20.3
|
1.0
|
|
N
|
D:GLY39
|
4.4
|
17.7
|
1.0
|
|
N
|
D:PHE101
|
4.4
|
16.6
|
1.0
|
|
CA
|
D:PHE101
|
4.5
|
16.2
|
1.0
|
|
N
|
D:ASN104
|
4.6
|
16.4
|
1.0
|
|
C
|
D:ASP103
|
4.6
|
16.8
|
1.0
|
|
CA
|
D:GLY39
|
4.7
|
18.6
|
1.0
|
|
CB
|
D:ASN104
|
4.7
|
13.5
|
1.0
|
|
CB
|
D:ASP96
|
4.7
|
15.8
|
1.0
|
|
CB
|
D:ASP103
|
4.8
|
14.6
|
1.0
|
|
CD1
|
D:TYR38
|
4.8
|
22.2
|
1.0
|
|
N
|
D:ASP103
|
4.8
|
14.5
|
1.0
|
|
C5
|
D:AMG201
|
4.8
|
27.0
|
1.0
|
|
O2
|
D:AMG201
|
4.8
|
34.0
|
1.0
|
|
C
|
D:PHE101
|
4.9
|
12.9
|
1.0
|
|
CA
|
D:ASN104
|
4.9
|
11.8
|
1.0
|
|
O
|
D:ASP103
|
4.9
|
17.3
|
1.0
|
|
CG
|
D:TYR38
|
4.9
|
16.3
|
1.0
|
|
CA
|
D:ASP103
|
5.0
|
12.9
|
1.0
|
|
Calcium binding site 5 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 5 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca202
b:12.8
occ:1.00
|
O
|
E:THR100
|
2.3
|
12.3
|
1.0
|
|
O
|
E:TYR38
|
2.3
|
19.8
|
1.0
|
|
OD1
|
E:ASP103
|
2.4
|
18.0
|
1.0
|
|
OD1
|
E:ASN104
|
2.4
|
16.0
|
1.0
|
|
OD2
|
E:ASP96
|
2.4
|
17.1
|
1.0
|
|
O3
|
E:AMG201
|
2.5
|
16.1
|
1.0
|
|
O4
|
E:AMG201
|
2.7
|
15.5
|
1.0
|
|
CG
|
E:ASP103
|
3.4
|
17.7
|
1.0
|
|
C
|
E:TYR38
|
3.4
|
16.9
|
1.0
|
|
CG
|
E:ASN104
|
3.4
|
14.7
|
1.0
|
|
C3
|
E:AMG201
|
3.5
|
16.2
|
1.0
|
|
CG
|
E:ASP96
|
3.5
|
18.2
|
1.0
|
|
C4
|
E:AMG201
|
3.5
|
17.0
|
1.0
|
|
C
|
E:THR100
|
3.5
|
14.8
|
1.0
|
|
OG1
|
E:THR100
|
3.6
|
17.0
|
1.0
|
|
OD2
|
E:ASP103
|
3.7
|
16.5
|
1.0
|
|
ND2
|
E:ASN104
|
3.8
|
11.2
|
1.0
|
|
OD1
|
E:ASP96
|
3.8
|
16.3
|
1.0
|
|
CB
|
E:THR100
|
3.9
|
17.3
|
1.0
|
|
CA
|
E:TYR38
|
4.0
|
11.6
|
1.0
|
|
C2
|
E:AMG201
|
4.1
|
23.7
|
1.0
|
|
CB
|
E:TYR38
|
4.2
|
10.6
|
1.0
|
|
CA
|
E:THR100
|
4.3
|
16.4
|
1.0
|
|
N
|
E:GLY39
|
4.4
|
15.4
|
1.0
|
|
N
|
E:PHE101
|
4.4
|
16.1
|
1.0
|
|
CA
|
E:PHE101
|
4.5
|
17.2
|
1.0
|
|
C
|
E:ASP103
|
4.6
|
12.2
|
1.0
|
|
N
|
E:ASN104
|
4.6
|
15.5
|
1.0
|
|
CA
|
E:GLY39
|
4.7
|
20.4
|
1.0
|
|
CB
|
E:ASP103
|
4.7
|
17.4
|
1.0
|
|
CB
|
E:ASN104
|
4.7
|
11.8
|
1.0
|
|
CB
|
E:ASP96
|
4.7
|
13.9
|
1.0
|
|
N
|
E:ASP103
|
4.8
|
15.6
|
1.0
|
|
O
|
E:ASP103
|
4.9
|
12.8
|
1.0
|
|
C5
|
E:AMG201
|
4.9
|
17.1
|
1.0
|
|
C
|
E:PHE101
|
4.9
|
18.4
|
1.0
|
|
O2
|
E:AMG201
|
4.9
|
23.1
|
1.0
|
|
CA
|
E:ASP103
|
4.9
|
18.0
|
1.0
|
|
CA
|
E:ASN104
|
5.0
|
15.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 6 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca202
b:18.6
occ:1.00
|
O
|
F:TYR38
|
2.3
|
18.8
|
1.0
|
|
O
|
F:THR100
|
2.3
|
21.2
|
1.0
|
|
O3
|
F:AMG201
|
2.4
|
20.7
|
1.0
|
|
OD1
|
F:ASN104
|
2.4
|
15.9
|
1.0
|
|
OD1
|
F:ASP103
|
2.4
|
21.7
|
1.0
|
|
OD2
|
F:ASP96
|
2.4
|
17.6
|
1.0
|
|
O4
|
F:AMG201
|
2.5
|
21.5
|
1.0
|
|
C3
|
F:AMG201
|
3.3
|
17.5
|
1.0
|
|
C4
|
F:AMG201
|
3.3
|
21.6
|
1.0
|
|
C
|
F:TYR38
|
3.3
|
18.7
|
1.0
|
|
CG
|
F:ASP103
|
3.4
|
21.5
|
1.0
|
|
CG
|
F:ASN104
|
3.4
|
22.8
|
1.0
|
|
C
|
F:THR100
|
3.5
|
17.6
|
1.0
|
|
CG
|
F:ASP96
|
3.5
|
20.9
|
1.0
|
|
OD2
|
F:ASP103
|
3.7
|
21.3
|
1.0
|
|
OG1
|
F:THR100
|
3.8
|
21.9
|
1.0
|
|
ND2
|
F:ASN104
|
3.8
|
24.8
|
1.0
|
|
CB
|
F:THR100
|
3.9
|
18.7
|
1.0
|
|
OD1
|
F:ASP96
|
3.9
|
17.8
|
1.0
|
|
C2
|
F:AMG201
|
3.9
|
24.5
|
1.0
|
|
CA
|
F:TYR38
|
3.9
|
19.5
|
1.0
|
|
CB
|
F:TYR38
|
4.2
|
19.1
|
1.0
|
|
CA
|
F:THR100
|
4.3
|
19.0
|
1.0
|
|
N
|
F:GLY39
|
4.4
|
22.2
|
1.0
|
|
N
|
F:PHE101
|
4.4
|
18.0
|
1.0
|
|
CA
|
F:PHE101
|
4.5
|
17.8
|
1.0
|
|
CA
|
F:GLY39
|
4.6
|
20.1
|
1.0
|
|
N
|
F:ASN104
|
4.7
|
16.8
|
1.0
|
|
C
|
F:ASP103
|
4.7
|
20.0
|
1.0
|
|
O2
|
F:AMG201
|
4.7
|
27.4
|
1.0
|
|
C5
|
F:AMG201
|
4.7
|
19.9
|
1.0
|
|
CB
|
F:ASP103
|
4.7
|
16.8
|
1.0
|
|
CB
|
F:ASN104
|
4.7
|
19.5
|
1.0
|
|
CB
|
F:ASP96
|
4.8
|
12.1
|
1.0
|
|
N
|
F:ASP103
|
4.9
|
16.2
|
1.0
|
|
C
|
F:PHE101
|
4.9
|
21.1
|
1.0
|
|
CD1
|
F:TYR38
|
5.0
|
20.6
|
1.0
|
|
O
|
F:ASP103
|
5.0
|
20.5
|
1.0
|
|
Calcium binding site 7 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 7 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca202
b:22.2
occ:1.00
|
O
|
G:TYR38
|
2.4
|
24.1
|
1.0
|
|
OD1
|
G:ASP103
|
2.4
|
24.6
|
1.0
|
|
O
|
G:THR100
|
2.4
|
21.2
|
1.0
|
|
O3
|
G:AMG201
|
2.4
|
22.8
|
1.0
|
|
OD1
|
G:ASN104
|
2.4
|
20.6
|
1.0
|
|
OD2
|
G:ASP96
|
2.5
|
21.7
|
1.0
|
|
O4
|
G:AMG201
|
2.6
|
22.8
|
1.0
|
|
CG
|
G:ASP103
|
3.4
|
29.2
|
1.0
|
|
C3
|
G:AMG201
|
3.4
|
20.2
|
1.0
|
|
CG
|
G:ASN104
|
3.4
|
21.8
|
1.0
|
|
C
|
G:TYR38
|
3.4
|
19.8
|
1.0
|
|
C4
|
G:AMG201
|
3.4
|
22.3
|
1.0
|
|
CG
|
G:ASP96
|
3.5
|
17.7
|
1.0
|
|
C
|
G:THR100
|
3.5
|
22.9
|
1.0
|
|
OD2
|
G:ASP103
|
3.6
|
24.6
|
1.0
|
|
ND2
|
G:ASN104
|
3.7
|
22.9
|
1.0
|
|
OG1
|
G:THR100
|
3.8
|
39.2
|
1.0
|
|
OD1
|
G:ASP96
|
3.9
|
19.1
|
1.0
|
|
CB
|
G:THR100
|
3.9
|
37.6
|
1.0
|
|
C2
|
G:AMG201
|
4.0
|
21.1
|
1.0
|
|
CA
|
G:TYR38
|
4.0
|
20.3
|
1.0
|
|
CB
|
G:TYR38
|
4.3
|
14.7
|
1.0
|
|
CA
|
G:THR100
|
4.4
|
26.3
|
1.0
|
|
N
|
G:GLY39
|
4.4
|
22.0
|
1.0
|
|
N
|
G:PHE101
|
4.4
|
18.1
|
1.0
|
|
CA
|
G:PHE101
|
4.5
|
21.4
|
1.0
|
|
N
|
G:ASN104
|
4.6
|
16.7
|
1.0
|
|
C
|
G:ASP103
|
4.6
|
23.9
|
1.0
|
|
CB
|
G:ASP103
|
4.7
|
25.8
|
1.0
|
|
CA
|
G:GLY39
|
4.7
|
25.6
|
1.0
|
|
CB
|
G:ASN104
|
4.7
|
18.1
|
1.0
|
|
O2
|
G:AMG201
|
4.7
|
26.5
|
1.0
|
|
N
|
G:ASP103
|
4.8
|
22.1
|
1.0
|
|
CB
|
G:ASP96
|
4.8
|
18.3
|
1.0
|
|
C5
|
G:AMG201
|
4.8
|
23.9
|
1.0
|
|
C
|
G:PHE101
|
4.9
|
29.6
|
1.0
|
|
O
|
G:ASP103
|
4.9
|
20.2
|
1.0
|
|
CA
|
G:ASP103
|
4.9
|
24.6
|
1.0
|
|
CA
|
G:ASN104
|
5.0
|
22.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 5odu
Go back to
Calcium Binding Sites List in 5odu
Calcium binding site 8 out
of 8 in the Plla Lectin, Monosaccharide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Plla Lectin, Monosaccharide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca202
b:22.2
occ:1.00
|
O
|
H:TYR38
|
2.3
|
22.4
|
1.0
|
|
OD1
|
H:ASN104
|
2.4
|
24.4
|
1.0
|
|
OD1
|
H:ASP103
|
2.4
|
22.8
|
1.0
|
|
O3
|
H:AMG201
|
2.4
|
39.9
|
1.0
|
|
O
|
H:THR100
|
2.4
|
31.2
|
1.0
|
|
OD2
|
H:ASP96
|
2.5
|
22.8
|
1.0
|
|
O4
|
H:AMG201
|
2.7
|
48.1
|
1.0
|
|
C
|
H:TYR38
|
3.3
|
25.4
|
1.0
|
|
C3
|
H:AMG201
|
3.4
|
47.1
|
1.0
|
|
CG
|
H:ASP103
|
3.4
|
25.0
|
1.0
|
|
CG
|
H:ASN104
|
3.4
|
19.2
|
1.0
|
|
C4
|
H:AMG201
|
3.5
|
50.1
|
1.0
|
|
CG
|
H:ASP96
|
3.5
|
23.1
|
1.0
|
|
C
|
H:THR100
|
3.6
|
27.5
|
1.0
|
|
OD2
|
H:ASP103
|
3.7
|
22.9
|
1.0
|
|
OG1
|
H:THR100
|
3.8
|
25.0
|
1.0
|
|
ND2
|
H:ASN104
|
3.8
|
24.9
|
1.0
|
|
CA
|
H:TYR38
|
3.9
|
18.5
|
1.0
|
|
OD1
|
H:ASP96
|
3.9
|
20.9
|
1.0
|
|
CB
|
H:THR100
|
4.1
|
31.7
|
1.0
|
|
CB
|
H:TYR38
|
4.1
|
19.7
|
1.0
|
|
C2
|
H:AMG201
|
4.1
|
51.4
|
1.0
|
|
N
|
H:GLY39
|
4.4
|
28.3
|
1.0
|
|
CA
|
H:THR100
|
4.4
|
34.6
|
1.0
|
|
N
|
H:PHE101
|
4.5
|
21.4
|
1.0
|
|
CA
|
H:PHE101
|
4.5
|
22.3
|
1.0
|
|
N
|
H:ASN104
|
4.6
|
22.8
|
1.0
|
|
C
|
H:ASP103
|
4.6
|
27.6
|
1.0
|
|
CB
|
H:ASP103
|
4.7
|
23.6
|
1.0
|
|
CB
|
H:ASN104
|
4.7
|
22.4
|
1.0
|
|
CA
|
H:GLY39
|
4.7
|
25.0
|
1.0
|
|
N
|
H:ASP103
|
4.8
|
23.5
|
1.0
|
|
CB
|
H:ASP96
|
4.8
|
17.9
|
1.0
|
|
C
|
H:PHE101
|
4.9
|
21.4
|
1.0
|
|
O2
|
H:AMG201
|
4.9
|
52.2
|
1.0
|
|
CD1
|
H:TYR38
|
4.9
|
19.3
|
1.0
|
|
C5
|
H:AMG201
|
4.9
|
50.3
|
1.0
|
|
CA
|
H:ASN104
|
4.9
|
22.1
|
1.0
|
|
CA
|
H:ASP103
|
4.9
|
24.8
|
1.0
|
|
O
|
H:ASP103
|
5.0
|
27.7
|
1.0
|
|
Reference:
G.Beshr,
A.Sikandar,
E.M.Jemiller,
N.Klymiuk,
D.Hauck,
S.Wagner,
E.Wolf,
J.Koehnke,
A.Titz.
Photorhabdus Luminescens Lectin A (Plla): A New Probe For Detecting Alpha-Galactoside-Terminating Glycoconjugates. J. Biol. Chem. V. 292 19935 2017.
ISSN: ESSN 1083-351X
PubMed: 28972138
DOI: 10.1074/JBC.M117.812792
Page generated: Mon Jul 15 09:46:32 2024
|
