Calcium in PDB 5ot1: The Type III Pullulan Hydrolase From Thermococcus Kodakarensis

The structure of The Type III Pullulan Hydrolase From Thermococcus Kodakarensis, PDB code: 5ot1 was solved by J.Guo, A.R.Coker, S.P.Wood, J.B.Cooper, R.Keegan, N.Ahmad, M.A.Muhammad, N.Rashid, M.Akhtar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	96.11 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	192.649, 63.888, 56.122, 90.00, 93.80, 90.00
R / Rfree (%)	24.2 / 27.9

The binding sites of Calcium atom in the The Type III Pullulan Hydrolase From Thermococcus Kodakarensis (pdb code 5ot1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Type III Pullulan Hydrolase From Thermococcus Kodakarensis, PDB code: 5ot1:

Calcium binding site 1 out of 1 in the The Type III Pullulan Hydrolase From Thermococcus Kodakarensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Type III Pullulan Hydrolase From Thermococcus Kodakarensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:38.7 occ:1.00 OD1 A:ASN303 2.3 31.2 1.0 OD1 A:ASP309 2.3 37.7 1.0 OD1 A:ASN308 2.3 39.6 1.0 OD2 A:ASP350 2.4 36.1 1.0 O A:ASN305 2.4 34.0 1.0 O A:GLY348 2.5 42.4 1.0 C A:GLY348 3.4 39.1 1.0 CG A:ASP350 3.4 37.3 1.0 CG A:ASP309 3.4 37.7 1.0 CG A:ASN308 3.5 41.8 1.0 CG A:ASN303 3.5 39.2 1.0 C A:ASN305 3.6 30.0 1.0 CB A:ASP350 3.9 38.7 1.0 CA A:GLY348 3.9 37.9 1.0 OD2 A:ASP309 4.0 37.7 1.0 ND2 A:ASN308 4.0 41.9 1.0 N A:ASP309 4.1 47.7 1.0 ND2 A:ASN303 4.2 35.2 1.0 CA A:LYS306 4.3 39.0 1.0 N A:LYS306 4.4 41.3 1.0 O A:LYS394 4.4 32.4 1.0 OD1 A:ASP350 4.4 37.0 1.0 N A:ASN305 4.4 42.8 1.0 CA A:ASP309 4.4 47.7 1.0 C A:ASN308 4.5 40.5 1.0 N A:GLY349 4.5 38.8 1.0 CA A:ASN305 4.5 39.9 1.0 CB A:ASP309 4.5 37.7 1.0 C A:GLY349 4.6 36.8 1.0 CB A:ASN303 4.6 43.0 1.0 N A:ASN308 4.6 37.7 1.0 C A:LYS306 4.7 37.9 1.0 CB A:ASN308 4.7 39.6 1.0 N A:ASP350 4.7 39.5 1.0 O A:GLY349 4.8 37.5 1.0 CB A:ASN305 4.8 45.4 1.0 CA A:ASN308 4.8 38.8 1.0 CA A:ASN303 4.9 46.4 1.0 CA A:ASP350 4.9 39.2 1.0 O A:LYS306 4.9 36.3 1.0 CA A:GLY349 4.9 37.6 1.0

J.Guo, A.R.Coker, S.P.Wood, J.B.Cooper, R.M.Keegan, N.Ahmad, M.A.Muhammad, N.Rashid, M.Akhtar. Structure and Function of the Type III Pullulan Hydrolase From Thermococcus Kodakarensis. Acta Crystallogr D Struct V. 74 305 2018BIOL.
ISSN: ISSN 2059-7983
PubMed: 29652257
DOI: 10.1107/S2059798318001754