Atomistry » Calcium » PDB 5oyl-5s4p » 5pak
Atomistry »
  Calcium »
    PDB 5oyl-5s4p »
      5pak »

Calcium in PDB 5pak: Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride

Enzymatic activity of Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride

All present enzymatic activity of Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride:
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride, PDB code: 5pak was solved by M.Stihle, A.Mayweg, S.Roever, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.73 / 1.56
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.402, 95.402, 116.322, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 20.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride (pdb code 5pak). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride, PDB code: 5pak:

Calcium binding site 1 out of 1 in 5pak

Go back to Calcium Binding Sites List in 5pak
Calcium binding site 1 out of 1 in the Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Factor Viia in Complex with N-[[4-(Aminomethyl)- 2-(2-Amino-2-Oxoethoxy)Phenyl]Methyl]-2-(4-Hydroxyphenyl)-2- Methoxyacetamide;Hydrochloride within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:19.5
occ:1.00
 O C:GLU275 2.2 23.1 1.0
OE1 C:GLU270 2.3 18.7 1.0
O C:ASP272 2.4 17.3 1.0
OE2 C:GLU280 2.4 18.8 1.0
O C:HOH798 2.4 21.3 1.0
O C:HOH650 2.5 21.5 1.0
CD C:GLU270 3.3 18.1 1.0
C C:ASP272 3.5 17.2 1.0
C C:GLU275 3.5 23.2 1.0
CD C:GLU280 3.5 17.2 1.0
OE2 C:GLU270 3.6 19.6 1.0
CG C:GLU280 3.9 15.8 1.0
N C:ASP272 4.0 17.0 1.0
O C:HOH724 4.0 16.6 1.0
CA C:HIS276 4.2 22.4 1.0
CA C:ASP272 4.2 17.6 1.0
N C:HIS276 4.3 22.3 1.0
N C:LEU273 4.4 17.4 1.0
N C:GLU275 4.4 22.6 1.0
N C:HIS271 4.5 16.0 1.0
CA C:GLU275 4.5 23.8 1.0
O C:HOH666 4.6 29.3 1.0
O C:HOH808 4.6 26.3 1.0
O C:HOH620 4.6 25.6 1.0
CA C:LEU273 4.6 18.0 1.0
N C:ASP277 4.6 21.2 1.0
CB C:ASP272 4.6 17.7 1.0
OE1 C:GLU280 4.6 18.5 1.0
CG C:GLU270 4.7 16.8 1.0
CG C:GLU275 4.7 26.0 1.0
C C:HIS276 4.9 22.2 1.0
C C:LEU273 4.9 19.0 1.0
C C:HIS271 4.9 16.6 1.0
OD1 C:ASP277 5.0 18.8 1.0

Reference:

A.Mayweg, S.Roever, M.G.Rudolph. Crystal Structure of A Factor Viia Complex To Be Published.
Page generated: Mon Jul 15 10:02:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy