Calcium in PDB 5pal: Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin

The structure of Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin, PDB code: 5pal was solved by F.Roquet, J.-P.Declercq, B.Tinant, J.Rambaud, J.Parello, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.54
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	32.120, 32.120, 149.000, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / n/a

The binding sites of Calcium atom in the Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin (pdb code 5pal). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin, PDB code: 5pal:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca110 b:6.1 occ:1.00 OD1 A:ASP92 2.4 9.6 1.0 OD1 A:ASP90 2.4 7.9 1.0 OD1 A:ASP94 2.4 9.9 1.0 O A:LYS96 2.4 9.6 1.0 OE1 A:GLU101 2.5 7.8 1.0 O A:HOH246 2.6 11.5 1.0 OE2 A:GLU101 2.6 9.3 1.0 CD A:GLU101 2.9 8.0 1.0 CG A:ASP94 3.3 10.9 1.0 CG A:ASP92 3.4 10.8 1.0 CG A:ASP90 3.5 7.3 1.0 OD2 A:ASP94 3.6 10.4 1.0 C A:LYS96 3.6 9.6 1.0 OD2 A:ASP92 3.7 11.6 1.0 CA A:ASP90 4.2 6.8 1.0 OD2 A:ASP90 4.2 7.5 1.0 N A:ASP94 4.2 10.2 1.0 O A:HOH283 4.2 37.5 1.0 N A:LYS96 4.3 10.6 1.0 CB A:ASP90 4.3 7.2 1.0 N A:ASP92 4.3 10.7 1.0 CB A:ASP94 4.4 10.2 1.0 CG A:GLU101 4.4 7.1 1.0 N A:GLY98 4.4 8.0 1.0 CA A:ILE97 4.5 7.8 1.0 N A:ILE97 4.5 8.1 1.0 O A:HOH241 4.5 35.2 1.0 C A:ASP90 4.5 7.1 1.0 CA A:LYS96 4.6 10.8 1.0 N A:HIS93 4.6 11.1 1.0 CB A:ASP92 4.6 10.0 1.0 N A:SER91 4.6 7.9 1.0 CA A:ASP94 4.8 10.3 1.0 CA A:ASP92 4.8 11.2 1.0 N A:GLY95 4.8 10.2 1.0 C A:ASP92 4.8 10.9 1.0 CG A:LYS96 4.9 14.9 1.0 C A:ILE97 4.9 8.0 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca111 b:7.7 occ:1.00 OD1 A:ASP53 2.4 10.6 1.0 OD1 A:ASP51 2.4 9.0 1.0 O A:PHE57 2.4 7.1 1.0 OE1 A:GLU59 2.4 9.8 1.0 OE1 A:GLU62 2.4 8.3 1.0 OG A:SER55 2.5 8.6 1.0 OE2 A:GLU62 2.6 10.2 1.0 CD A:GLU62 2.9 10.0 1.0 CG A:ASP53 3.3 12.2 1.0 CD A:GLU59 3.4 9.8 1.0 CG A:ASP51 3.5 8.7 1.0 OE2 A:GLU59 3.5 10.8 1.0 C A:PHE57 3.6 7.6 1.0 CB A:SER55 3.6 9.5 1.0 OD2 A:ASP53 3.7 13.3 1.0 N A:SER55 3.9 11.4 1.0 CA A:ASP51 4.2 9.3 1.0 OD2 A:ASP51 4.3 9.1 1.0 N A:ASP53 4.3 12.6 1.0 N A:GLU59 4.3 7.3 1.0 CG A:GLU62 4.3 9.9 1.0 CB A:ASP51 4.3 8.5 1.0 CA A:SER55 4.3 10.1 1.0 N A:PHE57 4.3 7.7 1.0 C A:ASP51 4.4 9.8 1.0 CA A:ILE58 4.4 6.6 1.0 N A:ILE58 4.5 6.6 1.0 O A:HOH261 4.5 24.6 1.0 N A:GLN54 4.5 12.8 1.0 CB A:ASP53 4.5 12.0 1.0 N A:LYS52 4.5 11.6 1.0 CA A:PHE57 4.6 8.0 1.0 CG A:GLU59 4.7 9.3 1.0 CA A:ASP53 4.8 12.6 1.0 C A:ASP53 4.8 13.1 1.0 N A:GLY56 4.8 9.5 1.0 O A:ASP51 4.9 9.3 1.0 C A:ILE58 4.9 7.2 1.0 C A:SER55 4.9 10.3 1.0 C A:GLN54 5.0 12.3 1.0

F.Roquet, J.P.Declercq, B.Tinant, J.Rambaud, J.Parello. Crystal Structure of the Unique Parvalbumin Component From Muscle of the Leopard Shark (Triakis Semifasciata). the First X-Ray Study of An Alpha-Parvalbumin. J.Mol.Biol. V. 223 705 1992.
ISSN: ISSN 0022-2836
PubMed: 1542115
DOI: 10.1016/0022-2836(92)90985-S