Calcium in PDB 5pb1: Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide

Enzymatic activity of Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide

All present enzymatic activity of Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide:
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide, PDB code: 5pb1 was solved by M.Stihle, A.Mayweg, S.Roever, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.79 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.676, 95.676, 117.961, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide (pdb code 5pb1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide, PDB code: 5pb1:

Calcium binding site 1 out of 1 in 5pb1

Go back to Calcium Binding Sites List in 5pb1
Calcium binding site 1 out of 1 in the Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Factor Viia in Complex with Benzenecarboximidamide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca501

b:19.7
occ:1.00
O D:GLU275 2.3 27.9 1.0
OE1 D:GLU270 2.3 20.8 1.0
O D:HOH634 2.3 25.0 1.0
O D:ASP272 2.4 20.2 1.0
OE2 D:GLU280 2.4 22.5 1.0
O D:HOH829 2.4 21.6 1.0
CD D:GLU270 3.3 20.9 1.0
CD D:GLU280 3.5 23.1 1.0
C D:GLU275 3.5 28.4 1.0
C D:ASP272 3.5 20.9 1.0
OE2 D:GLU270 3.6 22.7 1.0
CG D:GLU280 3.9 20.1 1.0
N D:ASP272 4.0 20.8 1.0
O D:HOH664 4.2 18.4 1.0
CA D:HIS276 4.2 27.7 1.0
CA D:ASP272 4.3 20.9 1.0
N D:HIS276 4.3 27.8 1.0
O D:HOH632 4.4 31.4 1.0
N D:GLU275 4.4 27.8 1.0
N D:LEU273 4.4 21.0 1.0
CA D:GLU275 4.5 29.6 1.0
O D:HOH827 4.5 25.9 1.0
N D:ASP277 4.5 26.7 1.0
OE1 D:GLU280 4.5 21.6 1.0
CG D:GLU275 4.6 33.4 1.0
N D:HIS271 4.6 19.8 1.0
CA D:LEU273 4.6 22.0 1.0
CG D:GLU270 4.6 19.5 1.0
CB D:ASP272 4.6 21.3 1.0
O D:HOH606 4.7 32.6 1.0
C D:HIS276 4.9 27.4 1.0
C D:LEU273 4.9 23.3 1.0

Reference:

A.Mayweg, S.Roever, M.G.Rudolph. Crystal Structure of A Factor Viia Complex To Be Published.
Page generated: Sat Dec 12 05:42:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy