Calcium in PDB 5t5o: Lectin From Bauhinia Forficata in Complex with Tn-Peptide
Protein crystallography data
The structure of Lectin From Bauhinia Forficata in Complex with Tn-Peptide, PDB code: 5t5o
was solved by
J.Lubkowski,
A.Wlodawer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.38 /
2.75
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.081,
187.290,
258.387,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
20.1 /
23
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Calcium atom in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
(pdb code 5t5o). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the
Lectin From Bauhinia Forficata in Complex with Tn-Peptide, PDB code: 5t5o:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 1 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:32.2
occ:1.00
|
OE2
|
A:GLU118
|
2.0
|
31.2
|
1.0
|
|
OE1
|
A:GLU129
|
2.0
|
35.6
|
1.0
|
|
O
|
A:HOH403
|
2.2
|
33.5
|
1.0
|
|
OD2
|
A:ASP120
|
2.2
|
32.0
|
1.0
|
|
O
|
A:HOH404
|
2.3
|
33.1
|
1.0
|
|
NE2
|
A:HIS134
|
2.5
|
33.0
|
1.0
|
|
CD
|
A:GLU118
|
3.1
|
31.1
|
1.0
|
|
CD
|
A:GLU129
|
3.2
|
36.5
|
1.0
|
|
CG
|
A:ASP120
|
3.3
|
31.6
|
1.0
|
|
O
|
A:HOH416
|
3.3
|
38.6
|
1.0
|
|
CE1
|
A:HIS134
|
3.4
|
33.5
|
1.0
|
|
OE1
|
A:GLU118
|
3.4
|
31.4
|
1.0
|
|
CD2
|
A:HIS134
|
3.5
|
32.8
|
1.0
|
|
CB
|
A:ASP120
|
3.8
|
31.0
|
1.0
|
|
OG
|
A:SER144
|
3.9
|
35.1
|
1.0
|
|
OE2
|
A:GLU129
|
3.9
|
36.5
|
1.0
|
|
CA
|
A:CA302
|
4.1
|
36.4
|
1.0
|
|
O
|
A:ILE142
|
4.2
|
35.2
|
1.0
|
|
CG
|
A:GLU129
|
4.2
|
37.6
|
1.0
|
|
O
|
A:HOH427
|
4.3
|
37.0
|
1.0
|
|
OD1
|
A:ASP120
|
4.4
|
31.9
|
1.0
|
|
CG
|
A:GLU118
|
4.4
|
30.6
|
1.0
|
|
ND1
|
A:HIS134
|
4.6
|
33.6
|
1.0
|
|
CG
|
A:HIS134
|
4.6
|
33.1
|
1.0
|
|
Calcium binding site 2 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 2 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca302
b:36.4
occ:1.00
|
O
|
A:HOH411
|
2.1
|
31.3
|
1.0
|
|
O
|
A:TRP122
|
2.2
|
32.9
|
1.0
|
|
OD1
|
A:ASN124
|
2.3
|
34.4
|
1.0
|
|
OE2
|
A:GLU129
|
2.4
|
36.5
|
1.0
|
|
OD2
|
A:ASP120
|
2.5
|
32.0
|
1.0
|
|
O
|
A:HOH416
|
2.6
|
38.6
|
1.0
|
|
OD1
|
A:ASP120
|
2.6
|
31.9
|
1.0
|
|
CG
|
A:ASP120
|
2.9
|
31.6
|
1.0
|
|
CD
|
A:GLU129
|
3.2
|
36.5
|
1.0
|
|
OE1
|
A:GLU129
|
3.3
|
35.6
|
1.0
|
|
C
|
A:TRP122
|
3.3
|
33.4
|
1.0
|
|
CG
|
A:ASN124
|
3.5
|
35.3
|
1.0
|
|
N
|
A:ASN124
|
3.9
|
35.4
|
1.0
|
|
CB
|
A:ASN124
|
4.1
|
35.9
|
1.0
|
|
CA
|
A:CA301
|
4.1
|
32.2
|
1.0
|
|
CA
|
A:TRP122
|
4.2
|
33.2
|
1.0
|
|
N
|
A:VAL123
|
4.3
|
34.1
|
1.0
|
|
N
|
A:TRP122
|
4.3
|
32.4
|
1.0
|
|
CB
|
A:ASP120
|
4.4
|
31.0
|
1.0
|
|
CA
|
A:VAL123
|
4.4
|
34.7
|
1.0
|
|
CB
|
A:TRP122
|
4.4
|
33.5
|
1.0
|
|
CD1
|
A:TRP122
|
4.5
|
34.9
|
1.0
|
|
C
|
A:VAL123
|
4.5
|
35.4
|
1.0
|
|
OD2
|
A:ASP78
|
4.6
|
33.6
|
1.0
|
|
CA
|
A:ASN124
|
4.6
|
36.3
|
1.0
|
|
ND2
|
A:ASN124
|
4.6
|
35.9
|
1.0
|
|
CG
|
A:GLU129
|
4.6
|
37.6
|
1.0
|
|
CE1
|
A:HIS134
|
4.6
|
33.5
|
1.0
|
|
O
|
A:GLY96
|
4.7
|
33.9
|
1.0
|
|
O
|
A:ASP78
|
4.8
|
31.6
|
1.0
|
|
CA
|
A:GLY96
|
4.8
|
34.4
|
1.0
|
|
NE2
|
A:HIS134
|
4.9
|
33.0
|
1.0
|
|
CG
|
A:TRP122
|
4.9
|
34.5
|
1.0
|
|
Calcium binding site 3 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 3 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca301
b:33.7
occ:1.00
|
OE1
|
B:GLU129
|
2.0
|
35.7
|
1.0
|
|
OD2
|
B:ASP120
|
2.1
|
32.5
|
1.0
|
|
O
|
B:HOH402
|
2.1
|
33.1
|
1.0
|
|
OE2
|
B:GLU118
|
2.1
|
31.7
|
1.0
|
|
O
|
B:HOH407
|
2.3
|
31.2
|
1.0
|
|
NE2
|
B:HIS134
|
2.4
|
34.2
|
1.0
|
|
CD
|
B:GLU129
|
3.2
|
36.8
|
1.0
|
|
CD
|
B:GLU118
|
3.2
|
31.1
|
1.0
|
|
CG
|
B:ASP120
|
3.2
|
32.5
|
1.0
|
|
CE1
|
B:HIS134
|
3.3
|
35.1
|
1.0
|
|
CD2
|
B:HIS134
|
3.4
|
34.1
|
1.0
|
|
OE1
|
B:GLU118
|
3.6
|
31.2
|
1.0
|
|
CB
|
B:ASP120
|
3.7
|
31.9
|
1.0
|
|
O
|
B:HOH405
|
3.8
|
32.4
|
1.0
|
|
OE2
|
B:GLU129
|
3.8
|
37.0
|
1.0
|
|
CA
|
B:CA302
|
3.9
|
36.2
|
1.0
|
|
OG
|
B:SER144
|
4.0
|
33.0
|
1.0
|
|
OD1
|
B:ASP120
|
4.2
|
33.0
|
1.0
|
|
CG
|
B:GLU129
|
4.3
|
38.2
|
1.0
|
|
O
|
B:ILE142
|
4.3
|
33.7
|
1.0
|
|
O
|
B:HOH430
|
4.4
|
34.3
|
1.0
|
|
ND1
|
B:HIS134
|
4.5
|
35.5
|
1.0
|
|
CG
|
B:GLU118
|
4.5
|
30.6
|
1.0
|
|
CG
|
B:HIS134
|
4.5
|
34.8
|
1.0
|
|
Calcium binding site 4 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 4 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca302
b:36.2
occ:1.00
|
O
|
B:TRP122
|
2.3
|
34.9
|
1.0
|
|
OD1
|
B:ASN124
|
2.3
|
35.2
|
1.0
|
|
OD1
|
B:ASP120
|
2.4
|
33.0
|
1.0
|
|
OE2
|
B:GLU129
|
2.4
|
37.0
|
1.0
|
|
OD2
|
B:ASP120
|
2.4
|
32.5
|
1.0
|
|
O
|
B:HOH411
|
2.5
|
32.8
|
1.0
|
|
O
|
B:HOH405
|
2.5
|
32.4
|
1.0
|
|
CG
|
B:ASP120
|
2.7
|
32.5
|
1.0
|
|
CD
|
B:GLU129
|
3.1
|
36.8
|
1.0
|
|
OE1
|
B:GLU129
|
3.2
|
35.7
|
1.0
|
|
C
|
B:TRP122
|
3.5
|
35.7
|
1.0
|
|
CG
|
B:ASN124
|
3.6
|
36.3
|
1.0
|
|
CA
|
B:CA301
|
3.9
|
33.7
|
1.0
|
|
N
|
B:ASN124
|
4.1
|
37.4
|
1.0
|
|
CB
|
B:ASN124
|
4.2
|
37.1
|
1.0
|
|
CB
|
B:ASP120
|
4.3
|
31.9
|
1.0
|
|
CA
|
B:TRP122
|
4.3
|
35.8
|
1.0
|
|
N
|
B:VAL123
|
4.4
|
36.8
|
1.0
|
|
N
|
B:TRP122
|
4.4
|
34.9
|
1.0
|
|
O
|
B:HOH407
|
4.4
|
31.2
|
1.0
|
|
CE1
|
B:HIS134
|
4.5
|
35.1
|
1.0
|
|
CB
|
B:TRP122
|
4.5
|
35.9
|
1.0
|
|
CG
|
B:GLU129
|
4.6
|
38.2
|
1.0
|
|
CA
|
B:VAL123
|
4.6
|
37.3
|
1.0
|
|
C
|
B:VAL123
|
4.7
|
37.9
|
1.0
|
|
CD1
|
B:TRP122
|
4.7
|
37.0
|
1.0
|
|
NE2
|
B:HIS134
|
4.7
|
34.2
|
1.0
|
|
ND2
|
B:ASN124
|
4.7
|
37.0
|
1.0
|
|
O
|
B:ASP78
|
4.7
|
33.0
|
1.0
|
|
O
|
B:GLY96
|
4.8
|
33.0
|
1.0
|
|
OD2
|
B:ASP78
|
4.8
|
35.5
|
1.0
|
|
CA
|
B:ASN124
|
4.8
|
38.1
|
1.0
|
|
CA
|
B:GLY96
|
4.9
|
34.4
|
1.0
|
|
Calcium binding site 5 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 5 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:47.3
occ:1.00
|
OE1
|
C:GLU129
|
1.9
|
52.8
|
1.0
|
|
OD2
|
C:ASP120
|
2.0
|
48.7
|
1.0
|
|
O
|
C:HOH401
|
2.1
|
48.9
|
1.0
|
|
OE2
|
C:GLU118
|
2.1
|
47.9
|
1.0
|
|
O
|
C:HOH402
|
2.2
|
46.5
|
1.0
|
|
NE2
|
C:HIS134
|
2.6
|
49.6
|
1.0
|
|
CD
|
C:GLU129
|
3.1
|
53.5
|
1.0
|
|
CD
|
C:GLU118
|
3.2
|
47.7
|
1.0
|
|
CG
|
C:ASP120
|
3.2
|
48.6
|
1.0
|
|
O
|
C:HOH404
|
3.4
|
50.1
|
1.0
|
|
CE1
|
C:HIS134
|
3.5
|
50.2
|
1.0
|
|
OE1
|
C:GLU118
|
3.5
|
48.5
|
1.0
|
|
CD2
|
C:HIS134
|
3.6
|
48.7
|
1.0
|
|
OE2
|
C:GLU129
|
3.8
|
53.7
|
1.0
|
|
CB
|
C:ASP120
|
3.8
|
47.7
|
1.0
|
|
CA
|
C:CA302
|
3.8
|
54.5
|
1.0
|
|
OG
|
C:SER144
|
4.1
|
48.7
|
1.0
|
|
O
|
C:ILE142
|
4.2
|
51.8
|
1.0
|
|
CG
|
C:GLU129
|
4.2
|
54.4
|
1.0
|
|
OD1
|
C:ASP120
|
4.2
|
49.3
|
1.0
|
|
O
|
C:HOH417
|
4.5
|
47.0
|
1.0
|
|
CG
|
C:GLU118
|
4.5
|
46.9
|
1.0
|
|
ND1
|
C:HIS134
|
4.6
|
49.7
|
1.0
|
|
CG
|
C:HIS134
|
4.7
|
48.8
|
1.0
|
|
NE1
|
C:TRP127
|
4.9
|
54.2
|
1.0
|
|
Calcium binding site 6 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 6 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:54.5
occ:1.00
|
OE2
|
C:GLU129
|
2.3
|
53.7
|
1.0
|
|
O
|
C:HOH405
|
2.3
|
51.0
|
1.0
|
|
OD1
|
C:ASN124
|
2.3
|
53.5
|
1.0
|
|
O
|
C:TRP122
|
2.4
|
51.6
|
1.0
|
|
O
|
C:HOH404
|
2.5
|
50.1
|
1.0
|
|
OD2
|
C:ASP120
|
2.5
|
48.7
|
1.0
|
|
OD1
|
C:ASP120
|
2.6
|
49.3
|
1.0
|
|
CG
|
C:ASP120
|
2.9
|
48.6
|
1.0
|
|
CD
|
C:GLU129
|
3.1
|
53.5
|
1.0
|
|
OE1
|
C:GLU129
|
3.2
|
52.8
|
1.0
|
|
CG
|
C:ASN124
|
3.5
|
54.7
|
1.0
|
|
C
|
C:TRP122
|
3.6
|
52.0
|
1.0
|
|
CA
|
C:CA301
|
3.8
|
47.3
|
1.0
|
|
N
|
C:ASN124
|
4.0
|
53.7
|
1.0
|
|
CB
|
C:ASN124
|
4.1
|
54.8
|
1.0
|
|
CB
|
C:ASP120
|
4.4
|
47.7
|
1.0
|
|
CA
|
C:TRP122
|
4.5
|
52.2
|
1.0
|
|
CG
|
C:GLU129
|
4.5
|
54.4
|
1.0
|
|
O
|
C:GLY96
|
4.5
|
52.5
|
1.0
|
|
ND2
|
C:ASN124
|
4.6
|
55.9
|
1.0
|
|
N
|
C:TRP122
|
4.6
|
51.2
|
1.0
|
|
N
|
C:VAL123
|
4.6
|
52.4
|
1.0
|
|
CD1
|
C:TRP122
|
4.6
|
54.6
|
1.0
|
|
CA
|
C:GLY96
|
4.6
|
53.9
|
1.0
|
|
CB
|
C:TRP122
|
4.6
|
53.1
|
1.0
|
|
CA
|
C:ASN124
|
4.7
|
55.1
|
1.0
|
|
CA
|
C:VAL123
|
4.7
|
52.6
|
1.0
|
|
C
|
C:VAL123
|
4.7
|
53.8
|
1.0
|
|
O
|
C:HOH401
|
4.7
|
48.9
|
1.0
|
|
CE1
|
C:HIS134
|
4.7
|
50.2
|
1.0
|
|
OD2
|
C:ASP78
|
4.7
|
53.6
|
1.0
|
|
O
|
C:ASP78
|
4.8
|
50.1
|
1.0
|
|
NE1
|
C:TRP127
|
4.9
|
54.2
|
1.0
|
|
NE2
|
C:HIS134
|
4.9
|
49.6
|
1.0
|
|
CZ2
|
C:TRP127
|
4.9
|
55.5
|
1.0
|
|
Calcium binding site 7 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 7 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:30.3
occ:1.00
|
OE1
|
D:GLU129
|
1.9
|
34.3
|
1.0
|
|
OE2
|
D:GLU118
|
2.1
|
31.5
|
1.0
|
|
OD2
|
D:ASP120
|
2.1
|
31.5
|
1.0
|
|
O
|
D:HOH403
|
2.3
|
32.1
|
1.0
|
|
O
|
D:HOH406
|
2.3
|
30.7
|
1.0
|
|
NE2
|
D:HIS134
|
2.5
|
32.4
|
1.0
|
|
CD
|
D:GLU118
|
3.1
|
31.3
|
1.0
|
|
CD
|
D:GLU129
|
3.1
|
34.9
|
1.0
|
|
CG
|
D:ASP120
|
3.2
|
31.3
|
1.0
|
|
CE1
|
D:HIS134
|
3.4
|
32.8
|
1.0
|
|
CD2
|
D:HIS134
|
3.4
|
32.5
|
1.0
|
|
OE1
|
D:GLU118
|
3.5
|
31.5
|
1.0
|
|
O
|
D:HOH409
|
3.6
|
30.4
|
1.0
|
|
CB
|
D:ASP120
|
3.7
|
31.2
|
1.0
|
|
OE2
|
D:GLU129
|
3.8
|
34.7
|
1.0
|
|
CA
|
D:CA302
|
3.9
|
31.0
|
1.0
|
|
OG
|
D:SER144
|
4.1
|
35.2
|
1.0
|
|
CG
|
D:GLU129
|
4.2
|
36.0
|
1.0
|
|
OD1
|
D:ASP120
|
4.2
|
31.5
|
1.0
|
|
O
|
D:ILE142
|
4.3
|
34.4
|
1.0
|
|
CG
|
D:GLU118
|
4.5
|
31.1
|
1.0
|
|
ND1
|
D:HIS134
|
4.5
|
33.2
|
1.0
|
|
CG
|
D:HIS134
|
4.6
|
33.0
|
1.0
|
|
O
|
D:HOH427
|
4.8
|
33.4
|
1.0
|
|
Calcium binding site 8 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 8 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca302
b:31.0
occ:1.00
|
O
|
D:HOH409
|
2.4
|
30.4
|
1.0
|
|
OD2
|
D:ASP120
|
2.4
|
31.5
|
1.0
|
|
OD1
|
D:ASN124
|
2.4
|
32.6
|
1.0
|
|
O
|
D:HOH404
|
2.4
|
30.4
|
1.0
|
|
O
|
D:TRP122
|
2.4
|
32.1
|
1.0
|
|
OE2
|
D:GLU129
|
2.4
|
34.7
|
1.0
|
|
OD1
|
D:ASP120
|
2.5
|
31.5
|
1.0
|
|
CG
|
D:ASP120
|
2.8
|
31.3
|
1.0
|
|
OE1
|
D:GLU129
|
3.1
|
34.3
|
1.0
|
|
CD
|
D:GLU129
|
3.1
|
34.9
|
1.0
|
|
CG
|
D:ASN124
|
3.5
|
33.4
|
1.0
|
|
C
|
D:TRP122
|
3.7
|
32.6
|
1.0
|
|
CA
|
D:CA301
|
3.9
|
30.3
|
1.0
|
|
CB
|
D:ASN124
|
4.2
|
34.1
|
1.0
|
|
N
|
D:ASN124
|
4.2
|
34.2
|
1.0
|
|
CB
|
D:ASP120
|
4.3
|
31.2
|
1.0
|
|
O
|
D:HOH406
|
4.5
|
30.7
|
1.0
|
|
CA
|
D:TRP122
|
4.5
|
32.5
|
1.0
|
|
O
|
D:GLY96
|
4.5
|
31.5
|
1.0
|
|
OD2
|
D:ASP78
|
4.6
|
33.0
|
1.0
|
|
N
|
D:TRP122
|
4.6
|
32.1
|
1.0
|
|
ND2
|
D:ASN124
|
4.6
|
33.8
|
1.0
|
|
CG
|
D:GLU129
|
4.6
|
36.0
|
1.0
|
|
CA
|
D:GLY96
|
4.6
|
32.0
|
1.0
|
|
N
|
D:VAL123
|
4.7
|
33.5
|
1.0
|
|
CB
|
D:TRP122
|
4.7
|
32.4
|
1.0
|
|
CE1
|
D:HIS134
|
4.7
|
32.8
|
1.0
|
|
O
|
D:ASP78
|
4.7
|
31.8
|
1.0
|
|
CD1
|
D:TRP122
|
4.7
|
33.0
|
1.0
|
|
CA
|
D:VAL123
|
4.8
|
33.9
|
1.0
|
|
C
|
D:VAL123
|
4.8
|
34.3
|
1.0
|
|
CA
|
D:ASN124
|
4.8
|
34.7
|
1.0
|
|
NE2
|
D:HIS134
|
4.9
|
32.4
|
1.0
|
|
NE1
|
D:TRP127
|
5.0
|
34.5
|
1.0
|
|
Calcium binding site 9 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 9 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca301
b:54.4
occ:1.00
|
OE1
|
E:GLU129
|
2.0
|
57.8
|
1.0
|
|
OE2
|
E:GLU118
|
2.1
|
54.5
|
1.0
|
|
O
|
E:HOH401
|
2.1
|
54.4
|
1.0
|
|
OD2
|
E:ASP120
|
2.3
|
56.2
|
1.0
|
|
O
|
E:HOH406
|
2.4
|
56.7
|
1.0
|
|
NE2
|
E:HIS134
|
2.5
|
53.1
|
1.0
|
|
CD
|
E:GLU118
|
3.1
|
54.7
|
1.0
|
|
CD
|
E:GLU129
|
3.2
|
58.4
|
1.0
|
|
OE1
|
E:GLU118
|
3.4
|
56.0
|
1.0
|
|
CD2
|
E:HIS134
|
3.5
|
52.0
|
1.0
|
|
O
|
E:HOH411
|
3.5
|
56.9
|
1.0
|
|
CG
|
E:ASP120
|
3.5
|
55.6
|
1.0
|
|
CE1
|
E:HIS134
|
3.5
|
53.4
|
1.0
|
|
OG
|
E:SER144
|
3.8
|
57.3
|
1.0
|
|
OE2
|
E:GLU129
|
3.8
|
58.4
|
1.0
|
|
CB
|
E:ASP120
|
4.0
|
54.2
|
1.0
|
|
O
|
E:ILE142
|
4.1
|
60.8
|
1.0
|
|
CG
|
E:GLU129
|
4.2
|
59.5
|
1.0
|
|
O
|
E:HOH416
|
4.3
|
55.7
|
1.0
|
|
CA
|
E:CA302
|
4.3
|
62.2
|
1.0
|
|
CG
|
E:GLU118
|
4.5
|
53.4
|
1.0
|
|
OD1
|
E:ASP120
|
4.6
|
56.3
|
1.0
|
|
ND1
|
E:HIS134
|
4.6
|
52.5
|
1.0
|
|
CG
|
E:HIS134
|
4.6
|
51.6
|
1.0
|
|
NE1
|
E:TRP127
|
4.9
|
62.5
|
1.0
|
|
Calcium binding site 10 out
of 20 in 5t5o
Go back to
Calcium Binding Sites List in 5t5o
Calcium binding site 10 out
of 20 in the Lectin From Bauhinia Forficata in Complex with Tn-Peptide
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Lectin From Bauhinia Forficata in Complex with Tn-Peptide within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca302
b:62.2
occ:1.00
|
O
|
E:HOH411
|
2.2
|
56.9
|
1.0
|
|
OD1
|
E:ASN124
|
2.2
|
61.9
|
1.0
|
|
O
|
E:TRP122
|
2.3
|
58.2
|
1.0
|
|
O
|
E:HOH407
|
2.3
|
56.5
|
1.0
|
|
OE2
|
E:GLU129
|
2.4
|
58.4
|
1.0
|
|
OD1
|
E:ASP120
|
2.6
|
56.3
|
1.0
|
|
OD2
|
E:ASP120
|
2.7
|
56.2
|
1.0
|
|
CG
|
E:ASP120
|
3.0
|
55.6
|
1.0
|
|
CD
|
E:GLU129
|
3.3
|
58.4
|
1.0
|
|
CG
|
E:ASN124
|
3.4
|
63.3
|
1.0
|
|
OE1
|
E:GLU129
|
3.5
|
57.8
|
1.0
|
|
C
|
E:TRP122
|
3.5
|
58.2
|
1.0
|
|
N
|
E:ASN124
|
4.1
|
61.3
|
1.0
|
|
CB
|
E:ASN124
|
4.1
|
63.4
|
1.0
|
|
CA
|
E:CA301
|
4.3
|
54.4
|
1.0
|
|
CA
|
E:TRP122
|
4.3
|
58.1
|
1.0
|
|
O
|
E:HOH406
|
4.4
|
56.7
|
1.0
|
|
CB
|
E:ASP120
|
4.4
|
54.2
|
1.0
|
|
N
|
E:TRP122
|
4.5
|
56.8
|
1.0
|
|
ND2
|
E:ASN124
|
4.5
|
64.9
|
1.0
|
|
OD2
|
E:ASP78
|
4.5
|
62.2
|
1.0
|
|
CB
|
E:TRP122
|
4.5
|
59.5
|
1.0
|
|
CD1
|
E:TRP122
|
4.5
|
61.7
|
1.0
|
|
N
|
E:VAL123
|
4.5
|
58.5
|
1.0
|
|
CA
|
E:GLY96
|
4.6
|
63.6
|
1.0
|
|
O
|
E:GLY96
|
4.6
|
62.3
|
1.0
|
|
CA
|
E:VAL123
|
4.7
|
59.1
|
1.0
|
|
O
|
E:ASP78
|
4.7
|
57.8
|
1.0
|
|
CA
|
E:ASN124
|
4.7
|
63.1
|
1.0
|
|
CG
|
E:GLU129
|
4.7
|
59.5
|
1.0
|
|
C
|
E:VAL123
|
4.7
|
60.9
|
1.0
|
|
CE1
|
E:HIS134
|
4.8
|
53.4
|
1.0
|
|
CG
|
E:TRP122
|
4.9
|
60.9
|
1.0
|
|
NE2
|
E:HIS134
|
5.0
|
53.1
|
1.0
|
|
CZ2
|
E:TRP127
|
5.0
|
64.1
|
1.0
|
|
Reference:
J.Lubkowski,
S.V.Durbin,
M.C.Silva,
D.Farnsworth,
J.C.Gildersleeve,
M.L.Oliva,
A.Wlodawer.
Structural Analysis and Unique Molecular Recognition Properties of A Bauhinia Forficata Lectin That Inhibits Cancer Cell Growth. Febs J. V. 284 429 2017.
ISSN: ISSN 1742-4658
PubMed: 27973758
DOI: 10.1111/FEBS.13989
Page generated: Mon Jul 15 10:54:06 2024
|
