Atomistry » Calcium » PDB 5szl-5tac » 5tac
Atomistry »
  Calcium »
    PDB 5szl-5tac »
      5tac »

Calcium in PDB 5tac: Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin

Enzymatic activity of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin

All present enzymatic activity of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin:
3.4.24.27;

Protein crystallography data

The structure of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin, PDB code: 5tac was solved by M.Dong, B.J.Bahnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.97 / 2.04
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.719, 93.719, 131.208, 90.00, 90.00, 120.00
R / Rfree (%) 13.6 / 18.6

Other elements in 5tac:

The structure of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin (pdb code 5tac). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin, PDB code: 5tac:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 5tac

Go back to Calcium Binding Sites List in 5tac
Calcium binding site 1 out of 4 in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:21.0
occ:1.00
 O A:GLU187 2.3 20.7 1.0
OD2 A:ASP138 2.4 22.3 1.0
OD1 A:ASP185 2.5 24.1 1.0
OE2 A:GLU190 2.5 20.6 1.0
OE1 A:GLU177 2.5 21.6 1.0
OE1 A:GLU190 2.5 23.2 1.0
O A:HOH563 2.5 19.9 1.0
OE2 A:GLU177 2.7 24.6 1.0
CD A:GLU190 2.8 23.4 1.0
CD A:GLU177 3.0 25.2 1.0
CG A:ASP138 3.4 21.9 1.0
C A:GLU187 3.5 23.6 1.0
CG A:ASP185 3.5 33.5 1.0
CA A:CA402 3.7 42.2 1.0
OD2 A:ASP185 3.8 27.1 1.0
CB A:ASP138 4.0 17.1 1.0
O A:ASP185 4.2 24.2 1.0
N A:GLU187 4.2 25.8 1.0
OD1 A:ASP138 4.3 24.0 1.0
N A:ILE188 4.3 18.9 1.0
CA A:GLU187 4.3 23.4 1.0
CG A:GLU190 4.3 25.0 1.0
CA A:ILE188 4.4 17.8 1.0
N A:GLY189 4.4 22.7 1.0
CG A:GLU177 4.4 16.8 1.0
O A:HOH561 4.4 27.6 1.0
O A:HOH540 4.5 41.7 1.0
C A:ASP185 4.6 23.9 1.0
N A:ASP185 4.6 23.9 1.0
CB A:GLU187 4.6 23.9 1.0
CB A:ASP185 4.8 26.7 1.0
C A:ILE188 4.8 24.6 1.0
CA A:ASP185 4.9 20.6 1.0
CB A:GLU177 5.0 19.0 1.0
O A:HOH545 5.0 45.7 1.0
N A:GLU190 5.0 19.5 1.0

Calcium binding site 2 out of 4 in 5tac

Go back to Calcium Binding Sites List in 5tac
Calcium binding site 2 out of 4 in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:42.2
occ:1.00
 OE2 A:GLU190 2.3 20.6 1.0
O A:HOH545 2.5 45.7 1.0
O A:HOH591 2.5 41.0 1.0
O A:ASN183 2.5 29.0 0.6
OE2 A:GLU177 2.6 24.6 1.0
OD2 A:ASP185 2.7 27.1 1.0
O A:ASN183 2.8 32.3 0.4
CD A:GLU190 3.3 23.4 1.0
CD A:GLU177 3.3 25.2 1.0
CG A:ASP185 3.4 33.5 1.0
C A:ASN183 3.7 32.5 0.6
OD1 A:ASP185 3.7 24.1 1.0
OE1 A:GLU177 3.7 21.6 1.0
CA A:CA401 3.7 21.0 1.0
CG A:GLU190 3.8 25.0 1.0
C A:ASN183 3.8 32.5 0.4
O A:LYS182 3.9 49.7 1.0
N A:ASP185 4.1 23.9 1.0
CA A:PRO184 4.2 29.7 1.0
OD2 A:ASP191 4.2 30.7 1.0
OD1 A:ASP191 4.3 31.2 1.0
OE1 A:GLU190 4.3 23.2 1.0
CB A:ASN183 4.3 35.9 0.6
C A:PRO184 4.3 38.4 1.0
CG A:GLU177 4.4 16.8 1.0
O A:HOH540 4.4 41.7 1.0
N A:PRO184 4.5 27.7 1.0
CB A:ASP185 4.5 26.7 1.0
CG A:ASP191 4.6 31.6 1.0
CA A:ASN183 4.6 37.1 0.6
CB A:ASN183 4.6 37.4 0.4
CA A:ASN183 4.8 36.9 0.4
ND2 A:ASN183 5.0 45.5 0.4
C A:LYS182 5.0 43.3 1.0
CA A:ASP185 5.0 20.6 1.0

Calcium binding site 3 out of 4 in 5tac

Go back to Calcium Binding Sites List in 5tac
Calcium binding site 3 out of 4 in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:20.1
occ:1.00
 O A:GLN61 2.2 18.9 0.6
O A:HOH682 2.3 25.5 1.0
O A:GLN61 2.3 19.6 0.4
O A:HOH581 2.4 19.6 1.0
OD1 A:ASP59 2.4 25.3 1.0
OD1 A:ASP57 2.4 20.7 1.0
O A:HOH558 2.5 21.6 1.0
OD2 A:ASP57 2.5 19.6 1.0
CG A:ASP57 2.8 21.8 1.0
CG A:ASP59 3.4 33.9 1.0
C A:GLN61 3.4 21.3 0.6
C A:GLN61 3.4 21.4 0.4
OD2 A:ASP59 3.7 23.9 1.0
O A:HOH636 3.9 31.3 1.0
N A:GLN61 4.0 20.3 0.4
N A:GLN61 4.0 20.3 0.6
CA A:GLN61 4.2 20.4 0.4
CA A:GLN61 4.2 20.4 0.6
N A:ASP59 4.3 22.6 1.0
CB A:ASP57 4.4 17.2 1.0
CB A:GLN61 4.4 23.2 0.4
CB A:GLN61 4.4 23.0 0.6
O A:HOH655 4.5 27.8 1.0
N A:PHE62 4.5 19.6 1.0
CB A:ASP59 4.6 22.8 1.0
OD2 A:ASP67 4.6 21.8 1.0
O A:HOH514 4.6 18.2 1.0
CA A:PHE62 4.7 24.6 1.0
N A:ASN60 4.7 20.4 1.0
N A:ALA58 4.7 16.7 1.0
O A:HOH696 4.7 50.3 1.0
CA A:ASP59 4.8 21.2 1.0
C A:ASP59 4.9 21.9 1.0

Calcium binding site 4 out of 4 in 5tac

Go back to Calcium Binding Sites List in 5tac
Calcium binding site 4 out of 4 in the Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:25.4
occ:1.00
 OG1 A:THR194 2.2 26.9 1.0
OD1 A:ASP200 2.3 25.1 1.0
O A:HOH627 2.3 32.8 1.0
O A:ILE197 2.4 33.9 1.0
O A:TYR193 2.4 22.9 1.0
O A:THR194 2.4 25.5 1.0
O A:HOH519 2.5 25.1 1.0
C A:THR194 3.2 34.0 1.0
C A:TYR193 3.4 27.1 1.0
CG A:ASP200 3.4 23.9 1.0
CB A:THR194 3.4 31.1 1.0
C A:ILE197 3.5 45.1 1.0
CA A:THR194 3.6 26.3 1.0
OD2 A:ASP200 3.7 27.2 1.0
N A:THR194 3.9 20.5 1.0
N A:ILE197 4.2 50.8 1.0
CA A:ILE197 4.2 35.8 1.0
CB A:ILE197 4.2 39.5 1.0
N A:PRO195 4.3 27.1 1.0
O A:ASP200 4.4 27.9 1.0
N A:SER198 4.6 38.2 0.7
O A:HOH670 4.6 48.4 1.0
CA A:TYR193 4.6 24.5 1.0
CG2 A:THR194 4.6 27.2 1.0
O A:GLU190 4.6 23.4 1.0
N A:SER198 4.6 38.3 0.3
N A:ASP200 4.6 30.1 1.0
CB A:TYR193 4.7 24.6 1.0
CA A:SER198 4.7 37.3 0.7
CA A:PRO195 4.7 33.5 1.0
CB A:ASP200 4.7 23.9 1.0
CD2 A:TYR193 4.8 26.6 1.0
C A:ASP200 4.8 22.5 1.0
CA A:SER198 4.8 37.7 0.3
C A:SER198 4.9 35.7 0.3
CA A:ASP200 5.0 28.2 1.0
CG2 A:ILE197 5.0 35.3 1.0
C A:PRO195 5.0 40.5 1.0

Reference:

M.Dong, B.J.Bahnson. Conformational Sampling Differences Across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin To Be Published.
Page generated: Mon Jul 15 11:02:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy