Calcium in PDB 5trx: Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography

Protein crystallography data

The structure of Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography, PDB code: 5trx was solved by E.G.Kovaleva, D.Oberthuer, A.Tolstikova, V.Mariani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.38
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 111.570, 154.860, 101.800, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.2

Other elements in 5trx:

The structure of Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography (pdb code 5trx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography, PDB code: 5trx:

Calcium binding site 1 out of 1 in 5trx

Go back to Calcium Binding Sites List in 5trx
Calcium binding site 1 out of 1 in the Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Room Temperature Structure of An Extradiol Ring-Cleaving Dioxygenase From B.Fuscum Determined Using Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:48.2
occ:1.00
OD1 B:ASP184 2.2 38.0 1.0
OE2 B:GLU185 2.6 54.8 1.0
CD B:GLU185 2.8 55.8 1.0
OE1 B:GLU185 3.0 61.4 1.0
CG B:ASP184 3.2 38.2 1.0
OD2 B:ASP184 3.5 38.3 1.0
CG B:GLU185 3.8 50.9 1.0
CB B:ASP184 4.5 37.8 1.0
N B:ASP184 4.5 37.2 1.0
N B:GLU185 4.6 40.9 1.0
C B:ASP184 4.7 39.8 1.0
NE2 B:HIS288 4.7 39.0 1.0
CA B:ASP184 4.8 38.3 1.0
CB B:GLU185 4.8 46.5 1.0

Reference:

D.Oberthuer, J.Knoska, M.O.Wiedorn, K.R.Beyerlein, D.A.Bushnell, E.G.Kovaleva, M.Heymann, L.Gumprecht, R.A.Kirian, A.Barty, V.Mariani, A.Tolstikova, L.Adriano, S.Awel, M.Barthelmess, K.Dorner, P.L.Xavier, O.Yefanov, D.R.James, G.Nelson, D.Wang, G.Calvey, Y.Chen, A.Schmidt, M.Szczepek, S.Frielingsdorf, O.Lenz, E.Snell, P.J.Robinson, B.Sarler, G.Belsak, M.Macek, F.Wilde, A.Aquila, S.Boutet, M.Liang, M.S.Hunter, P.Scheerer, J.D.Lipscomb, U.Weierstall, R.D.Kornberg, J.C.H.Spence, L.Pollack, H.N.Chapman, S.Bajt. Double-Flow Focused Liquid Injector For Efficient Serial Femtosecond Crystallography Sci. Rep. V. 7 44628 2017.
ISSN: ESSN 2045-2322
DOI: 10.1038/SREP44628
Page generated: Sat Dec 12 05:44:49 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy