Calcium in PDB 5ts2: Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A

Enzymatic activity of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A

All present enzymatic activity of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A:
2.7.7.3;

Protein crystallography data

The structure of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A, PDB code: 5ts2 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.87 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 98.380, 101.350, 105.710, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 24.4

Other elements in 5ts2:

The structure of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A also contains other interesting chemical elements:

Chlorine (Cl) 11 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A (pdb code 5ts2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A, PDB code: 5ts2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5ts2

Go back to Calcium Binding Sites List in 5ts2
Calcium binding site 1 out of 2 in the Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:24.5
occ:1.00
NE2 A:HIS-3 2.2 45.1 1.0
NE2 A:HIS-5 2.4 42.6 1.0
CE1 A:HIS-3 3.0 45.1 1.0
CD2 A:HIS-5 3.2 41.6 1.0
CD2 A:HIS-3 3.2 44.1 1.0
CE1 A:HIS-5 3.4 42.6 1.0
ND1 A:HIS-3 4.2 50.0 1.0
CG A:HIS-3 4.3 44.9 1.0
CG A:HIS-5 4.4 41.0 1.0
ND1 A:HIS-5 4.5 41.8 1.0

Calcium binding site 2 out of 2 in 5ts2

Go back to Calcium Binding Sites List in 5ts2
Calcium binding site 2 out of 2 in the Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca202

b:0.3
occ:1.00
O E:HOH330 2.4 54.2 1.0
O E:HOH311 2.5 45.2 1.0
O E:VAL64 2.6 56.1 1.0
O E:HOH319 3.1 56.6 1.0
C E:VAL64 3.8 49.2 1.0
O E:HOH309 4.0 45.7 1.0
NE2 E:GLN55 4.3 77.5 1.0
OE1 E:GLN55 4.4 79.2 1.0
O E:LEU61 4.4 64.4 1.0
CA E:GLU65 4.5 52.5 1.0
N E:GLU65 4.6 49.2 1.0
CD E:GLN55 4.8 77.4 1.0
CA E:VAL64 4.8 50.9 1.0
N E:VAL64 4.9 49.2 1.0

Reference:

T.E.Edwards, D.R.Davies, J.W.Fairman, D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Phosphopantetheine Adenylyltransferase (Coad, Ppat) From Pseudomonas Aeruginosa Bound to Dephospho Coenzyme A To Be Published.
Page generated: Sat Dec 12 05:44:51 2020

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