Calcium in PDB 5uli: Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion

The structure of Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion, PDB code: 5uli was solved by S.K.Doamekpor, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.93 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.867, 87.678, 53.158, 90.00, 113.02, 90.00
R / Rfree (%)	16.1 / 20.8

The binding sites of Calcium atom in the Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion (pdb code 5uli). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion, PDB code: 5uli:

Calcium binding site 1 out of 1 in the Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Dxo in Complex with (3'-Nadp)+ and Calcium Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:37.0 occ:1.00 O A:HOH515 2.3 40.6 1.0 O A:HOH501 2.4 41.5 0.9 OE2 A:GLU253 2.4 32.7 1.0 O A:LEU254 2.5 23.4 1.0 OD2 A:ASP236 2.5 27.4 1.0 OP2 A:0WD402 2.9 56.5 1.0 O A:HOH506 3.0 41.7 0.9 CG A:ASP236 3.4 28.1 1.0 OE2 A:GLU192 3.4 44.6 1.0 OD1 A:ASP236 3.5 28.9 1.0 CD A:GLU253 3.6 32.1 1.0 C A:LEU254 3.6 26.6 1.0 O A:HOH502 3.7 43.8 1.0 O3B A:0WD402 3.8 59.4 1.0 O A:HOH541 4.1 25.6 1.0 P2' A:0WD402 4.1 64.7 1.0 N A:LEU254 4.1 20.0 1.0 O A:HOH536 4.2 36.2 1.0 NZ A:LYS255 4.2 25.5 1.0 OE1 A:GLU253 4.3 32.2 1.0 CD A:LYS255 4.3 25.6 1.0 CA A:LEU254 4.3 24.0 1.0 CD A:GLU192 4.5 46.5 1.0 CG A:GLU253 4.5 23.8 1.0 CE A:LYS255 4.6 27.4 1.0 CB A:LEU254 4.7 24.9 1.0 N A:LYS255 4.7 21.7 1.0 H25 A:0WD402 4.8 52.9 1.0 CB A:ASP236 4.8 20.2 1.0 H19 A:0WD402 4.8 58.5 1.0 OP1 A:0WD402 4.8 51.3 1.0 O2B A:0WD402 4.9 44.1 1.0 CA A:LYS255 4.9 22.2 1.0

X.Jiao, S.K.Doamekpor, J.G.Bird, B.E.Nickels, L.Tong, R.P.Hart, M.Kiledjian. 5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes Rna Decay Through Dxo-Mediated Denadding. Cell V. 168 1015 2017.
ISSN: ISSN 1097-4172
PubMed: 28283058
DOI: 10.1016/J.CELL.2017.02.019