Calcium in PDB 5umh: Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans

Enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans

All present enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans:
1.13.11.1;

Protein crystallography data

The structure of Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans, PDB code: 5umh was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.15 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.220, 52.330, 121.290, 90.00, 93.15, 90.00
R / Rfree (%) 13 / 16.3

Other elements in 5umh:

The structure of Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans (pdb code 5umh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans, PDB code: 5umh:

Calcium binding site 1 out of 1 in 5umh

Go back to Calcium Binding Sites List in 5umh
Calcium binding site 1 out of 1 in the Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase Protein From Burkholderia Multivorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:21.8
occ:0.68
 O A:HOH1008 2.2 27.2 1.0
O A:HOH763 2.4 25.8 1.0
O A:HOH1076 2.4 46.6 1.0
O A:HOH1074 2.4 58.2 1.0
O A:HOH954 2.4 24.3 1.0
O A:HOH603 2.4 38.9 1.0
O A:HOH727 2.4 44.3 1.0
O A:HOH695 4.1 19.2 1.0
O A:HOH1041 4.4 48.4 1.0
O A:HOH593 4.4 19.3 1.0
O A:HOH902 4.7 39.9 1.0
OG1 A:THR170 4.7 22.6 1.0
O A:GLY171 4.8 23.1 1.0
O A:HOH907 4.8 46.9 1.0
OD2 A:ASP168 4.9 16.7 1.0
O A:HOH758 5.0 21.1 1.0
O A:ALA172 5.0 20.2 1.0

Reference:

S.L.Delker, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Catechol 1,2-Dioxygenase Protein, From Burkholderia Multivorans Atcc 17616 To Be Published.
Page generated: Sat Dec 12 05:46:26 2020

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