Calcium in PDB 5uqz: Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence

The structure of Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence, PDB code: 5uqz was solved by M.R.Larson, S.Purushotham, J.Mieher, R.Wu, K.R.Rajashankar, H.Wu, C.Deivanayagam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.53 / 1.15
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	213.098, 48.596, 40.775, 90.00, 96.29, 90.00
R / Rfree (%)	12.4 / 14.6

The binding sites of Calcium atom in the Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence (pdb code 5uqz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence, PDB code: 5uqz:

Calcium binding site 1 out of 1 in the Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Analysis of the Glucan Binding Protein C of Streptococcus Mutans Provides Evidence That It Mediates Both Sucrose-Independent and -Dependent Adherence within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:9.7 occ:1.00 OD1 A:ASN349 2.3 11.8 1.0 O A:SER347 2.4 8.9 1.0 O A:HOH761 2.4 13.9 1.0 OG A:SER347 2.5 11.1 1.0 O A:HOH657 2.5 13.7 1.0 OE1 A:GLU360 2.5 9.9 1.0 O A:HOH942 2.5 23.4 1.0 O A:HOH620 2.6 24.7 1.0 C A:SER347 3.4 8.8 1.0 CB A:SER347 3.4 10.1 1.0 CD A:GLU360 3.5 9.9 1.0 CG A:ASN349 3.5 10.0 1.0 OE2 A:GLU360 3.8 12.2 1.0 O A:HOH1017 3.8 32.1 1.0 CA A:SER347 3.9 8.4 1.0 O A:HOH983 4.2 27.1 1.0 N A:ASN349 4.3 8.6 1.0 OD2 A:ASP408 4.4 12.3 1.0 ND2 A:ASN349 4.4 11.8 1.0 O A:HOH999 4.4 27.6 1.0 CG1 A:ILE450 4.4 10.8 1.0 CB A:ASN349 4.4 9.9 1.0 N A:LEU348 4.5 8.1 1.0 O A:TRP451 4.5 9.5 1.0 O A:HOH1030 4.6 37.3 1.0 O A:HOH690 4.6 34.9 1.0 OD1 A:ASP408 4.6 12.2 1.0 CG A:GLU360 4.8 9.1 1.0 CA A:LEU348 4.8 8.0 1.0 CG A:ASP408 4.9 13.0 1.0 CD1 A:ILE450 5.0 10.9 1.0

J.L.Mieher, M.R.Larson, N.Schormann, S.Purushotham, R.Wu, K.R.Rajashankar, H.Wu, C.Deivanayagam. Glucan Binding Protein C of Streptococcus Mutans Mediates Both Sucrose-Independent and Sucrose-Dependent Adherence. Infect. Immun. V. 86 2018.
ISSN: ESSN 1098-5522
PubMed: 29685986
DOI: 10.1128/IAI.00146-18