Atomistry » Calcium » PDB 5ufq-5uw6 » 5uve
Atomistry »
  Calcium »
    PDB 5ufq-5uw6 »
      5uve »

Calcium in PDB 5uve: Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus

Protein crystallography data

The structure of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus, PDB code: 5uve was solved by Y.Kim, G.Chhor, M.Endres, J.Hero, G.Babnigg, S.Crosson, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.78 / 2.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 82.602, 92.738, 95.124, 95.19, 110.87, 111.35
R / Rfree (%) 22.6 / 27.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus (pdb code 5uve). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus, PDB code: 5uve:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 1 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:47.1
occ:1.00
O H:GLY286 2.2 50.2 1.0
OG1 A:THR192 2.4 73.2 1.0
O A:THR192 2.5 48.6 1.0
C H:GLY286 3.4 50.4 1.0
C A:THR192 3.5 46.3 1.0
CB A:THR192 3.5 50.9 1.0
O H:HOH504 3.8 33.9 1.0
CA A:THR192 4.0 48.4 1.0
CA H:GLY286 4.1 45.2 1.0
N A:THR192 4.3 46.7 1.0
N H:GLU287 4.5 51.2 1.0
CD H:PRO288 4.5 42.4 1.0
N H:PRO288 4.6 44.4 1.0
CG H:PRO288 4.6 41.2 1.0
C H:GLU287 4.6 51.6 1.0
CA H:GLU287 4.7 53.2 1.0
N A:LEU193 4.7 47.1 1.0
CG2 A:THR192 4.8 45.3 1.0

Calcium binding site 2 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 2 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:47.4
occ:1.00
O D:GLY286 2.4 40.2 1.0
O B:THR192 2.4 50.7 1.0
OG1 B:THR192 2.5 58.0 1.0
O D:HOH507 3.0 36.4 1.0
C B:THR192 3.4 51.4 1.0
C D:GLY286 3.5 44.1 1.0
CB B:THR192 3.5 45.5 1.0
CA B:THR192 3.8 45.1 1.0
N B:THR192 4.0 45.4 1.0
CA D:GLY286 4.1 48.3 1.0
N B:LEU193 4.6 47.9 1.0
O D:HOH506 4.6 41.9 1.0
N D:GLU287 4.6 38.8 1.0
CD D:PRO288 4.7 41.9 1.0
CG D:PRO288 4.8 44.8 1.0
CG2 B:THR192 4.8 40.7 1.0
CA D:GLU287 4.9 50.6 1.0
N D:PRO288 4.9 39.6 1.0
C D:GLU287 5.0 45.9 1.0

Calcium binding site 3 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 3 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca401

b:52.6
occ:1.00
O F:GLY286 2.4 54.9 1.0
O C:THR192 2.6 51.9 1.0
OG1 C:THR192 2.6 55.6 1.0
C F:GLY286 3.6 44.8 1.0
C C:THR192 3.6 41.1 1.0
CB C:THR192 3.7 42.6 1.0
CA C:THR192 4.0 38.2 1.0
CA F:GLY286 4.2 46.2 1.0
N C:THR192 4.2 39.3 1.0
CD F:PRO288 4.6 47.4 1.0
N F:GLU287 4.6 38.7 1.0
CG F:PRO288 4.7 43.0 1.0
N C:LEU193 4.7 39.1 1.0
CA F:GLU287 4.8 38.2 1.0
N F:PRO288 4.8 48.3 1.0
C F:GLU287 4.9 37.5 1.0
CG2 C:THR192 4.9 45.5 1.0

Calcium binding site 4 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 4 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca401

b:50.4
occ:1.00
O D:HOH503 2.2 51.8 1.0
OG1 D:THR192 2.4 34.4 1.0
O D:THR192 2.6 47.2 1.0
O B:GLY286 2.6 61.4 1.0
O B:HOH508 2.9 42.9 1.0
CB D:THR192 3.5 39.2 1.0
C D:THR192 3.5 44.4 1.0
C B:GLY286 3.7 54.0 1.0
CA D:THR192 4.0 36.1 1.0
N D:THR192 4.3 31.6 1.0
CA B:GLY286 4.3 50.8 1.0
N D:LEU193 4.7 46.3 1.0
CD B:PRO288 4.7 44.7 1.0
CG B:PRO288 4.8 44.9 1.0
CG2 D:THR192 4.8 33.1 1.0
N B:GLU287 4.8 50.0 1.0
N B:PRO288 4.9 44.4 1.0

Calcium binding site 5 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 5 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:49.6
occ:1.00
OG1 E:THR192 2.4 49.4 1.0
O G:GLY286 2.5 44.2 1.0
O G:HOH511 2.5 40.4 1.0
O E:THR192 2.6 66.3 1.0
CB E:THR192 3.5 47.6 1.0
C E:THR192 3.6 51.5 1.0
C G:GLY286 3.6 45.8 1.0
CA E:THR192 3.9 46.7 1.0
N E:THR192 4.1 44.9 1.0
CA G:GLY286 4.3 55.9 1.0
CD G:PRO288 4.7 43.4 1.0
N G:GLU287 4.7 46.0 1.0
CG G:PRO288 4.7 44.5 1.0
N E:LEU193 4.8 50.7 1.0
CG2 E:THR192 4.8 48.6 1.0
N G:PRO288 4.9 48.6 1.0
CA G:GLU287 4.9 52.3 1.0
C G:GLU287 5.0 60.3 1.0

Calcium binding site 6 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 6 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca401

b:43.7
occ:1.00
O C:GLY286 2.4 40.1 1.0
OG1 F:THR192 2.4 36.8 1.0
O F:THR192 2.5 50.2 1.0
C C:GLY286 3.5 47.5 1.0
C F:THR192 3.5 45.0 1.0
CB F:THR192 3.5 35.2 1.0
CA F:THR192 3.9 34.1 1.0
CA C:GLY286 4.0 42.3 1.0
N F:THR192 4.1 34.3 1.0
N C:GLU287 4.6 43.1 1.0
CD C:PRO288 4.6 40.4 1.0
N F:LEU193 4.7 40.0 1.0
CG C:PRO288 4.7 41.4 1.0
CG2 F:THR192 4.8 34.7 1.0
CA C:GLU287 4.9 41.8 1.0
N C:PRO288 4.9 39.1 1.0
C C:GLU287 5.0 40.6 1.0

Calcium binding site 7 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 7 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca401

b:57.6
occ:1.00
O E:GLY286 2.4 55.4 1.0
OG1 G:THR192 2.4 56.5 1.0
O G:THR192 2.6 58.6 1.0
C G:THR192 3.5 53.1 1.0
CB G:THR192 3.6 39.8 1.0
C E:GLY286 3.6 50.6 1.0
CA G:THR192 3.9 46.9 1.0
N G:THR192 4.2 39.5 1.0
CA E:GLY286 4.3 54.8 1.0
CD E:PRO288 4.4 50.0 1.0
CG E:PRO288 4.5 50.8 1.0
N E:GLU287 4.6 48.5 1.0
N G:LEU193 4.7 50.9 1.0
N E:PRO288 4.7 46.9 1.0
CA E:GLU287 4.8 51.0 1.0
CG2 G:THR192 4.8 35.9 1.0
C E:GLU287 4.9 46.5 1.0

Calcium binding site 8 out of 8 in 5uve

Go back to Calcium Binding Sites List in 5uve
Calcium binding site 8 out of 8 in the Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of the Abc Transporter Substrate-Binding Protein BAB1_0226 From Brucella Abortus within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca401

b:46.3
occ:1.00
OG1 H:THR192 2.5 71.7 1.0
O A:GLY286 2.6 43.3 1.0
O H:THR192 2.8 46.8 1.0
C A:GLY286 3.8 42.8 1.0
C H:THR192 3.8 49.0 1.0
CB H:THR192 3.8 45.5 1.0
CA H:THR192 4.2 44.9 1.0
N H:THR192 4.4 42.9 1.0
CA A:GLY286 4.5 43.4 1.0
CG A:PRO288 4.5 55.9 1.0
CD A:PRO288 4.5 49.9 1.0
CG2 H:THR192 4.6 47.3 1.0
N A:PRO288 4.7 45.2 1.0
N A:GLU287 4.8 41.9 1.0
C A:GLU287 4.8 48.3 1.0
CA A:GLU287 4.9 46.9 1.0
N H:LEU193 5.0 45.6 1.0

Reference:

Y.Kim, L.Bigelow, M.Endres, G.Babnigg, S.Crosson, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Beta-Barrel-Like Protein of Unknown Function To Be Published.
Page generated: Mon Jul 15 12:13:06 2024

Last articles

Ba in 8AMI
Ba in 7ZG5
Ba in 7RJT
Ba in 7RK6
Ba in 7T6Y
Ba in 7ECM
Ba in 7KI3
Ba in 7ECF
Ba in 7OTB
Ba in 7MJT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy